View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_53 (Length: 295)
Name: NF17408_low_53
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 37997179 - 37996896
Alignment:
| Q |
4 |
atattatgagaaaccttttgaataaaaattaggcaccaagtcaacaacatat-----------aattccccttgaaattaaccataacctataacatgtc |
92 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37997179 |
atattattagaaaccttttgaataaaaattaggcaccaagtcaacaacatatttacaacatataattccccttgaaattaaccataacctataacatgtc |
37997080 |
T |
|
| Q |
93 |
tccttaaaaagcaaagtgtaattacttccaaattctttcatcaatcaattattatgaagtctaatgtgtttaccaagctcttaagcttannnnnnnctat |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
37997079 |
tccttaaaaagcaaagtgtaattacttccaaattctttcatcaatcaattattatgaagtctaatgtgtttaccaagttcttgagcttatttttttctat |
37996980 |
T |
|
| Q |
193 |
gagataaaaccttcatctctatgatcctctgatttctaatatgactgagatttatgaggctcataaagatatcctacatcagcat |
277 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37996979 |
gagat-aaaccttcatctctatgatcctctgatttctaatatgactgagatttatgaggctcataaagatatcctacatcagcat |
37996896 |
T |
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