View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_54 (Length: 290)
Name: NF17408_low_54
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 29007914 - 29007661
Alignment:
| Q |
19 |
atgcattacatgatagttttcgttctcagagtctaggttacgaaaataacgaaatgagaaagatattgatataaaacatgatgtgataatggtgggaaaa |
118 |
Q |
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| T |
29007914 |
atgcattacatgatagttttcgttctcagagtctaggttacaaaaataacgaaatgagaaatatattgatataaaacatgatgtgataatggtgggaaaa |
29007815 |
T |
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| Q |
119 |
gcagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttg-aattaaaatttgtaataacgaacggttcattggatatgt |
217 |
Q |
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| T |
29007814 |
acagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaaattaaaatttgtaataacgaacggttcattggatatgt |
29007715 |
T |
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| Q |
218 |
gatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaacc |
271 |
Q |
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| T |
29007714 |
gatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaacc |
29007661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 21409299 - 21409558
Alignment:
| Q |
19 |
atgcattacatgatagttttcgttctcagagtctaggttacgaaaataacgaaatgagaaagatattga---tataaaacatgatgtgataatggtgg-g |
114 |
Q |
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| T |
21409299 |
atgcattacgtggtagttttcgttcttggagtctaggttatgaaaataacgagatgagaaagatattgacggtataaaacatgatgtgataatggtggaa |
21409398 |
T |
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| Q |
115 |
aaaagcagag-aaaaaactc--aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattg |
210 |
Q |
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| T |
21409399 |
aaaaacagagaaaaaaactcaaaaaataagtggcaggaacaaagtaaagtgtatttttcgaatgtctaaattaaaattggtaataac-aaatgttcattg |
21409497 |
T |
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| Q |
211 |
gatatgtgatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaacc |
271 |
Q |
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| T |
21409498 |
gatatgtgatgattgacagtgtttacttacacaccgttgtacgacgtaattgaggtaaacc |
21409558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 21461598 - 21461847
Alignment:
| Q |
17 |
tcatgcattacatgatagttttcgttctcagagtctaggttacgaaaataacgaaatgagaaagatatt---gatataaaacatgatgtgataatggtgg |
113 |
Q |
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| T |
21461598 |
tcatgcattacgtggtagttttcgttcttggagtctaggttatgaaaataacgaaatgagaaagatattgacgatataaaacatgatgtgataatggtgg |
21461697 |
T |
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| Q |
114 |
gaaaagcagagaaaaaactc--aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattg |
210 |
Q |
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| T |
21461698 |
----------aaaaaaactcaaaaaataagtggcaggaacaaagtaaagtgtattttttgaatgtataaattaaaattagtaataac-aaatgttcattg |
21461786 |
T |
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| Q |
211 |
gatatgtgatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaacc |
271 |
Q |
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| T |
21461787 |
gatatgtgatgattgacagcgtttacttacacaccgttgtacaacgtaattgaggtaaacc |
21461847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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