View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_56 (Length: 282)
Name: NF17408_low_56
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 16912846 - 16912720
Alignment:
| Q |
144 |
tttatatgataaaatttaaggattcgtaacagaaaaagaaatgaaattaatcagaaaggaaatctaagcttagcttattgacaagaaaaataaatgtgga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||| || |||||||||||||| |
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| T |
16912846 |
tttatatgataaaatttaaggattcgtaacagaaaaagaaatgaagttgatca-aaaggaaatctaagcttatcttattgacgaggaaaataaatgtgga |
16912748 |
T |
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| Q |
244 |
aaataaattaatgggttgcctcatattc |
271 |
Q |
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| T |
16912747 |
aaataaattaatgggttgcctcatattc |
16912720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 16912989 - 16912905
Alignment:
| Q |
5 |
gtagtaagccccactagttattgtgctcttgaatgtaatggtaactaacc----ttgtaaacattctgaaatgactttttaagac |
85 |
Q |
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| T |
16912989 |
gtagtaagccccactagttattgtgcttttgaatgtaatggtaactaacctccattgtaaacgttctgaaatggctttttaagac |
16912905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 19155239 - 19155120
Alignment:
| Q |
144 |
tttatatgataaaatttaaggattcgtaacagaaaaagaaatgaaattaatcagaaaggaaatctaagcttagcttattgacaa-gaaaaataaatgt-g |
241 |
Q |
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|||||| ||||||| | |||||| |||||| ||||||||||||| || || ||||||||||||| || |||||||||||| || ||||||||||||| | |
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| T |
19155239 |
tttataagataaaactctaggattagtaacataaaaagaaatgaagttgattagaaaggaaatctcagattagcttattgaaaaggaaaaataaatgtag |
19155140 |
T |
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| Q |
242 |
gaaaataaattaatgggttg |
261 |
Q |
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| T |
19155139 |
gaaaataaactaataggttg |
19155120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 20754638 - 20754519
Alignment:
| Q |
144 |
tttatatgataaaatttaaggattcgtaacagaaaaagaaatgaaattaatcagaaaggaaatctaagcttagcttattgacaa-gaaaaataaatgt-g |
241 |
Q |
| |
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|||||| ||||||| | |||||| |||||| ||||||||||||| || || ||||||||||||| || |||||||||||| || ||||||||||||| | |
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| T |
20754638 |
tttataagataaaactctaggattagtaacataaaaagaaatgaagttgattagaaaggaaatctcagattagcttattgaaaaggaaaaataaatgtag |
20754539 |
T |
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| Q |
242 |
gaaaataaattaatgggttg |
261 |
Q |
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||||||||| |||| ||||| |
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| T |
20754538 |
gaaaataaactaataggttg |
20754519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 9055416 - 9055469
Alignment:
| Q |
197 |
gaaaggaaatctaagcttagcttattgacaagaaaaataaatgtggaaaataaa |
250 |
Q |
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| T |
9055416 |
gaaaggaaatctcagcttaacttattgaaaaggaaaataaatgtggaaaataaa |
9055469 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 24263428 - 24263507
Alignment:
| Q |
144 |
tttatatgataaaatttaaggattcgtaacagaaaaagaaa-tgaaattaatcagaaaggaaatctaagcttagcttatt |
222 |
Q |
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|||||||||||||| | ||||| |||| ||||||| ||| ||||||| || ||||||||||||| ||||||||||||| |
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| T |
24263428 |
tttatatgataaaacatgtggattagtaagagaaaaataaaatgaaattgattagaaaggaaatctcagcttagcttatt |
24263507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 17142701 - 17142748
Alignment:
| Q |
144 |
tttatatgataaaatttaaggattcgtaacagaaaaagaaatgaaatt |
191 |
Q |
| |
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|||||| ||||||| || |||||| ||||||||||||||||||||||| |
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| T |
17142701 |
tttataagataaaacttgaggattagtaacagaaaaagaaatgaaatt |
17142748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 15455726 - 15455791
Alignment:
| Q |
152 |
ataaaatttaaggattcgtaacagaaaaagaaatgaaattaatcagaaaggaaatctaagcttagc |
217 |
Q |
| |
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|||||| || |||||| |||||||||||||||||||| ||||| || ||||||||| | |||||| |
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| T |
15455726 |
ataaaacttgaggattagtaacagaaaaagaaatgaagttaattagtcaggaaatctcaccttagc |
15455791 |
T |
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