View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_58 (Length: 277)
Name: NF17408_low_58
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 50573083 - 50572814
Alignment:
| Q |
11 |
gaacctgtggagaatacactactcaaatcaaatcatcatcaaaaagattatgttttgataataaactgacat---tagatgggtatagatgaatattttt |
107 |
Q |
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| T |
50573083 |
gaacctgtggagaatacactgctcaagtcaaatcatcatcaaaaagattatgttttgataacaaactgacatcattagatggttatagatgaatatttta |
50572984 |
T |
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| Q |
108 |
gaaatattaagaataatatcttaannnnnnnnncattaagtagttaggcccatagcggccatgaatcatgacaactgcacaattggctagtgacgatgat |
207 |
Q |
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| T |
50572983 |
gaaatataaagaataatatcttaatttttttttcattaagtagttaggcccatagcggccatgaatcatgacaactgcacaattggctagtgacgatgat |
50572884 |
T |
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| Q |
208 |
tttgagaacaacagcaatgacccaaaataggcaatgtgaataaccttaggaagtggtagttgtgggagtg |
277 |
Q |
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| T |
50572883 |
tttgagaacaacagcaatgacccaaaataggcaatgtgaataaccttaggaagtggtagttgtgggagtg |
50572814 |
T |
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