View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_59 (Length: 273)
Name: NF17408_low_59
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 32887385 - 32887635
Alignment:
| Q |
1 |
ggttctgttttagcagctaaaacctttcaaaaactgagccaagacacaattcagacctaccagttggtttggagtttgcatgggatatgctttttctaaa |
100 |
Q |
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| T |
32887385 |
ggttctgttttagcagctagaacctttcaaaaactgagccaagacacaattcagacctaccagttggtttggagtttgcatgggatatgctttttctaaa |
32887484 |
T |
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| Q |
101 |
cttattcgtggagtcacattcgatatacgtaattacagccatagtggatcaacaacaaaatcactcttatttgaatggcatcgttcaggaatgtgttaat |
200 |
Q |
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| T |
32887485 |
cttattcgtagagtcacattcgatatacgtaattgcagccatagtggatcaacaacaaaatcactcttatttgaatggcatcgttcatgaatgtgttaat |
32887584 |
T |
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| Q |
201 |
ttatttccttgcttttacatattacaattttgtctcatcaggtgcgttgcg |
251 |
Q |
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| T |
32887585 |
ttatttccttgcttttacatattacaattttgtctcaacaggtgcgttgcg |
32887635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 12147413 - 12147335
Alignment:
| Q |
156 |
caaaatcactcttatttgaatggcatcgttcaggaatgtgttaatttatttccttgcttttacatattacaattttgtc |
234 |
Q |
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|||||||||||||||||||||| | | ||||| |||||||||| || ||||||| |||| | | | |||||||||||| |
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| T |
12147413 |
caaaatcactcttatttgaatgtccttgttcaagaatgtgttagttcctttccttactttcatagactacaattttgtc |
12147335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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