View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_60 (Length: 269)
Name: NF17408_low_60
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52186645 - 52186423
Alignment:
| Q |
1 |
tcctaatagagtagaaacatagaagagggccaagttggatggatggatggataccttgtaaccctagtgtgcctctcgcgagtcgcgagcgataccttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52186645 |
tcctaatagagtagaaacatagaagagggccaagttggatggatggatggataccttgtaaccctagtgtgcctctcgcgagtcgcgagcgataccttgc |
52186546 |
T |
|
| Q |
101 |
aaaattcttcctttttagtttctactttctccagagatttttattgtttttctttggacgataatgtcctctgtctgttagataatctccaccaactctc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52186545 |
aaaattcttcctttttagtttctactttctccagagatttttattgtttttctttggacgataatgtcctctgtctgttagataatctccaccaactctc |
52186446 |
T |
|
| Q |
201 |
tttttgtttcacaaaaatcttag |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
52186445 |
tttttgtttcacaaaaatcttag |
52186423 |
T |
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