View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_62 (Length: 261)
Name: NF17408_low_62
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 33728092 - 33728330
Alignment:
| Q |
7 |
catcatcaaagtttaaacactggcattttgagggtattatcgggatttcttggtaattaaaaataaaccaagtttaaacattagtcattagggcttaata |
106 |
Q |
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| T |
33728092 |
catcatcaaagtttaaagactggcattttgagggtattatcgggatttctcggtaattaaaaataaaccaagtttaaacattagtcattagggcttaata |
33728191 |
T |
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| Q |
107 |
cttcgcgtttcttctcgcgcgctctctcactctgtccctcaccgcctttcatctcaaacttccgctgcaattccatctccggcgatcctggttcgttttc |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
33728192 |
cttctcgtttcttctcgcgcgctctctcactctgtccctcaccgcctttcatctcaaacttccgccgcaattccatctccagtgatcctggttcgttttc |
33728291 |
T |
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| Q |
207 |
cggcggtatctttgttttctccttctctcacgtaacatt |
245 |
Q |
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| T |
33728292 |
cggcggtatctttgttttctccttctctcacgttacatt |
33728330 |
T |
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Back To:
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 38771410 - 38771357
Alignment:
| Q |
173 |
gcaattccatctccggcgatcctggttcgttttccggcggtatctttgttttctc |
227 |
Q |
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| T |
38771410 |
gcaattccatctccggcggtcctg-ttcgttttccaacggtatctttgttttctc |
38771357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 894650 - 894590
Alignment:
| Q |
168 |
ccgctgcaattccatctccggcgatcctggttcgttttccggcggtatctttgttttctcct |
229 |
Q |
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| T |
894650 |
ccgccgcacttccatctctggcaatccta-ttcgttttccggcggtatctttgttttctcct |
894590 |
T |
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