View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_68 (Length: 248)
Name: NF17408_low_68
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27507218 - 27507456
Alignment:
| Q |
1 |
cataagttgtatccacagaacaaaattagttttgctatttcaattagctaatggggaaaggacctaccatcaaatgtacatgaaagaataagggaaaaga |
100 |
Q |
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| T |
27507218 |
cataagttgtatccacagaacaaaatcagttttgctaattcaattagctaacggggaaaggacctaccatcaaatgtacatgaaagaataagggaaaaaa |
27507317 |
T |
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| Q |
101 |
atatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccagacgatta |
200 |
Q |
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| T |
27507318 |
atatgattcaaagaacaagtgtgtgctactcatgcgactttgataacgcctattaagagttatttggaataacatgcacatcagatgatccagacgatta |
27507417 |
T |
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| Q |
201 |
taacttttttaggcattaacagagtgaaattaaaatatt |
239 |
Q |
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| T |
27507418 |
taacttttttaggcattaacagagtgaaattaaaatatt |
27507456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 27502259 - 27502441
Alignment:
| Q |
54 |
gggaaaggacctaccatcaaatgtacatgaaagaataagggaaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttt |
153 |
Q |
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| T |
27502259 |
gggaaaggaattaccaccaaattaacatggaagaataaggaaaaagaatatgattcaaagaacaagtgtgtactattcaagcgattttgatatcaccttt |
27502358 |
T |
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| Q |
154 |
taagcgttatttggaataacatgcacatcagatgatccagacgattataacttttttaggcattaacagagtgaaattaaaat |
236 |
Q |
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| T |
27502359 |
gaagtgttatttggagcaacatgcagatcagatgacccagacgattataactattttaggcattaacagactgaaattaaaat |
27502441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 27484804 - 27484663
Alignment:
| Q |
95 |
aaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccaga |
194 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| |||||||| ||||||||| ||| | |
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| T |
27484804 |
aaaataatatgactcaaagaacaagtgtgtgctattcatgcgacttggataatgcctttgaagcattatttggagcaacatgcagatcagatgacccaaa |
27484705 |
T |
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| Q |
195 |
cgattataacttttttaggcattaacagagtgaaattaaaat |
236 |
Q |
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| T |
27484704 |
caattataacttttttaggcattaacagactgaaattaaaat |
27484663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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