View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_72 (Length: 243)
Name: NF17408_low_72
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_72 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 36464134 - 36463961
Alignment:
| Q |
11 |
cacagacgcaaataaattgtttaaaaaattaaaattaacttactttccacgatagcacttcatgagtatatattcatagttggtgtgatctatttcaata |
110 |
Q |
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| T |
36464134 |
cacagacgcaaataaattgtttaaaaaattaaaattaacttacttttcacaatagcacttcatgagtatatattcatagttggtgtgatctatttcaata |
36464035 |
T |
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| Q |
111 |
aaaataaatctgaacagagaaaataaggataagagaacatgaagaaaaaatccaaccattcttctatatcaaaa |
184 |
Q |
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| T |
36464034 |
aaaataaatctgaacagagaaaataaggataagagaacatgaagaaaaaatccaaccattcttctatatcaaaa |
36463961 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 4351329 - 4351267
Alignment:
| Q |
86 |
atagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagagaac |
148 |
Q |
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| T |
4351329 |
atagttggtgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagagaac |
4351267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 29199293 - 29199237
Alignment:
| Q |
169 |
ttcttctatatcaaaatagatgagaaaggaacaaattgaagtgaaagaggaaacttt |
225 |
Q |
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| T |
29199293 |
ttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaacttt |
29199237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 19768947 - 19768895
Alignment:
| Q |
169 |
ttcttctatatcaaaatagatgagaaaggaacaaattgaagtgaaagaggaaa |
221 |
Q |
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| T |
19768947 |
ttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaa |
19768895 |
T |
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Target: scaffold0352 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 15690 - 15751
Alignment:
| Q |
86 |
atagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagagaac |
148 |
Q |
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| T |
15690 |
atagttggtgtgaacaatttcaataaagataaatctgaagaga-aaaatatgaataagagaac |
15751 |
T |
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