View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_75 (Length: 241)
Name: NF17408_low_75
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_75 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 12124725 - 12124493
Alignment:
| Q |
11 |
aaaatcaattattttcaccgtataaccaaacacac--gtaattttgcagatataataatgagtatgtggtttgcaaaattcacctttttgaaacaggaat |
108 |
Q |
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| T |
12124725 |
aaaatcaattattttcaccgtataaccaaacacacacgtaattttgctgatataataatgagtatgtggtttgcaaaattcacctttttgaaacaggaat |
12124626 |
T |
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| Q |
109 |
gatatgacagagcatgccgacttagaaacccctttctggaaaagaatcagaatcataccattcgacccaccagaagaatacaaacatataattccaaaag |
208 |
Q |
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| T |
12124625 |
gatatgacagagcatgccgacttagaaacccctttctggaaaagaatcagaatcataccattcgacccaccagaagaatacaaacatataattccaaaag |
12124526 |
T |
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| Q |
209 |
tgatattgatgtgagaagaataagaggataaaa |
241 |
Q |
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| T |
12124525 |
tgatattgatgtgagaagaataagaggataaaa |
12124493 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 37531784 - 37531749
Alignment:
| Q |
11 |
aaaatcaattattttcaccgtataaccaaacacacg |
46 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
37531784 |
aaaatcaatttttttcaccgtataaccaaacacacg |
37531749 |
T |
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