View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_76 (Length: 240)
Name: NF17408_low_76
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 6156206 - 6156417
Alignment:
| Q |
19 |
atcaactctagcaaaaccataccaaaactatagatatcagattgtcgagttaatttgccagtcttcgcatattctggtgcacagtagccttcagtaccca |
118 |
Q |
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| T |
6156206 |
atcaactctagcaaaaccataccaaaactatagatatcagattgtcgggttaatttgccagtcttcgcatattctggtgcacagtagccttcagtaccca |
6156305 |
T |
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| Q |
119 |
tcactctggtttcaacatgagtgttgcctccggtaggtcctaattttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgtt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6156306 |
tcactctggtttcaacatgagtgttgcctccggtaggtcctaattttgcaagaccaaaatcggacagttttgcgttgaagtcgttgtccaataaaatgtt |
6156405 |
T |
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| Q |
219 |
ggcagatttcat |
230 |
Q |
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|||||||||||| |
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| T |
6156406 |
ggcagatttcat |
6156417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 54031881 - 54032090
Alignment:
| Q |
18 |
aatcaactctagcaaaaccataccaaaactatagatatcagattgtcgagttaatttgccagtcttcgcatattctggtgcacagtagccttcagtaccc |
117 |
Q |
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| T |
54031881 |
aatcaactccaacaaaaccacaccaaagctgtagatatcagacttaagagttaatttgccactcatcgcatattctggcgcgcagtagccatatgtaccc |
54031980 |
T |
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| Q |
118 |
atcactctggtttcaacatgagtgttgcctccggtaggtcctaattttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgt |
217 |
Q |
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| T |
54031981 |
atcactctcgttgaaacatgggtgttgtctccaacaggtcctagcttagcaagcccaaaatctgacagttttgggctgaagtcgctgtctaataagatgt |
54032080 |
T |
|
| Q |
218 |
tggcagattt |
227 |
Q |
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| |||||||| |
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| T |
54032081 |
ttgcagattt |
54032090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 56020516 - 56020717
Alignment:
| Q |
28 |
agcaaaaccataccaaaactatagatatcagattgtcgagttaatttgccagtcttcgcatattctggtgcacagtagccttcagtacccatcactctgg |
127 |
Q |
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|||||||||| ||||||||| |||||||| |||||| |||||||||||||||| | ||||||||| |||| || |||||||| ||||||||||||| || |
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| T |
56020516 |
agcaaaaccacaccaaaactgtagatatcggattgtttagttaatttgccagtcatagcatattctagtgcgcaatagccttcggtacccatcactcggg |
56020615 |
T |
|
| Q |
128 |
tttcaacatgagtgttgcctccggtaggtcctaattttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagattt |
227 |
Q |
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| T |
56020616 |
ttgaaacatgtgtgtcgtctccaaccggtccaagtttagcaagcccgaaatctgacagttttgcactgaagtcatgttccagtaaaatgtttgaagattt |
56020715 |
T |
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| Q |
228 |
ca |
229 |
Q |
| |
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|| |
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| T |
56020716 |
ca |
56020717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 21139474 - 21139538
Alignment:
| Q |
163 |
tttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagattt |
227 |
Q |
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| T |
21139474 |
tttgctagtccaaaatcagagagttttgcattgaaatctttgtccaataagatgttggaagattt |
21139538 |
T |
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