View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_81 (Length: 234)
Name: NF17408_low_81
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 48649959 - 48650173
Alignment:
| Q |
1 |
tttgtaacattcaaagatgcagaggctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatggtcgacgagccaactgcaatatcgcttctcttg |
100 |
Q |
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| T |
48649959 |
tttgtaacattcaaagatgcagattctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatggtcgacgagccaactgcaatatcgcttctcttg |
48650058 |
T |
|
| Q |
101 |
gtgctcgtcgtccaaggtcttctcccatcannnnnnnnnnnnnnnnnnnnnnnnttccatacacacaaggaggaacaaagaatatccaccgtagaaacca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48650059 |
gtgctcgtcgtccaaggtcttctcccatcactcctcctccttctcctcctcctcttccatacacacaaggaggaacaaagaatatccaccgtagaaatca |
48650158 |
T |
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| Q |
201 |
gcagcaggttcaatg |
215 |
Q |
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||||||||||||||| |
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| T |
48650159 |
gcagcaggttcaatg |
48650173 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 41290796 - 41290736
Alignment:
| Q |
8 |
cattcaaagatgcagaggctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatgg |
68 |
Q |
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||||||| || |||||||| ||||| ||||||||||||||||||| ||||| ||||||||| |
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| T |
41290796 |
cattcaaggaagcagaggcagcaaataaggcttgcgaggaaccaagtgtgaacatcaatgg |
41290736 |
T |
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