View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_82 (Length: 233)

Name: NF17408_low_82
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_82
NF17408_low_82
[»] chr3 (7 HSPs)
chr3 (79-215)||(2257394-2257534)
chr3 (92-205)||(52653524-52653636)
chr3 (98-201)||(50914667-50914769)
chr3 (17-51)||(2257531-2257565)
chr3 (92-139)||(23686025-23686072)
chr3 (92-139)||(24058262-24058309)
chr3 (110-189)||(33709591-33709670)
[»] chr5 (2 HSPs)
chr5 (92-205)||(36202866-36202978)
chr5 (99-205)||(11043029-11043134)
[»] chr8 (2 HSPs)
chr8 (92-205)||(12729141-12729253)
chr8 (120-205)||(28696338-28696422)
[»] chr4 (5 HSPs)
chr4 (92-204)||(20251147-20251258)
chr4 (92-186)||(122829-122922)
chr4 (98-207)||(48780114-48780221)
chr4 (108-205)||(24129597-24129693)
chr4 (121-205)||(1495028-1495110)
[»] chr7 (2 HSPs)
chr7 (98-205)||(12239877-12239982)
chr7 (134-205)||(24533198-24533269)
[»] chr6 (1 HSPs)
chr6 (98-205)||(28612400-28612504)
[»] chr2 (1 HSPs)
chr2 (92-205)||(34681354-34681466)
[»] chr1 (4 HSPs)
chr1 (92-168)||(49053555-49053630)
chr1 (92-168)||(49061135-49061210)
chr1 (92-174)||(42263734-42263817)
chr1 (115-189)||(12634262-12634334)
[»] scaffold0007 (1 HSPs)
scaffold0007 (98-182)||(215647-215730)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 2257534 - 2257394
Alignment:
Q  79 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgta------ttgtttg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      |||||||    
T  2257534 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagacca-tttagagaaaagatgtattgtttttgtttg 2257436  T
Q  173 acaattgaagcaatgtaggcattcatgaacaaattttggatat 215  Q
    ||||||| |||||||||| || |||||||||||||||||||||    
T  2257435 acaattg-agcaatgtagtcactcatgaacaaattttggatat 2257394  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 52653524 - 52653636
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 191  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| | ||| |||||| |||||| ||||||||||||||||||| ||||||||      
T  52653524 tgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaatacc-ttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  192 cattcatgaacaaa 205  Q
    ||||||||||||||    
T  52653623 cattcatgaacaaa 52653636  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 50914769 - 50914667
Alignment:
Q  98 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 197  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||| || |||||||||||||||||| |  ||||||    
T  50914769 agaaattttcaaaatatatttgaaaagttgcaatggttaaatagagacc-ttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattca 50914671  T
Q  198 tgaa 201  Q
    ||||    
T  50914670 tgaa 50914667  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 2257565 - 2257531
Alignment:
Q  17 aaaatatgttgagtagtattagaggatagtttaca 51  Q
    |||||||||||||||||||||||||||||||||||    
T  2257565 aaaatatgttgagtagtattagaggatagtttaca 2257531  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 23686025 - 23686072
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 139  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  23686025 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 23686072  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 24058262 - 24058309
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 139  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  24058262 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 24058309  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 33709591 - 33709670
Alignment:
Q  110 aatatatttgaaaagttgcaatgcttaaatagagaccattt-tagagaaaagatgtattgtttgacaattgaagcaatgta 189  Q
    |||||||||| |||||||||||| ||||| ||||||| ||| || | ||||| |||| || || |||||||||||||||||    
T  33709591 aatatatttggaaagttgcaatggttaaa-agagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 36202866 - 36202978
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 191  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| || |||||||||||| |||||||      
T  36202866 tgtgagagaaatttttaaaatatatttgaaaagttgcaatggttaaaaagagacc-ttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaac 36202964  T
Q  192 cattcatgaacaaa 205  Q
    ||||||||||||||    
T  36202965 cattcatgaacaaa 36202978  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 11043134 - 11043029
Alignment:
Q  99 gaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcat 198  Q
    |||||||  ||||||||||||||||||| ||  | ||||||| ||| | ||||||||||||| |||| |||||| | ||| || |||| ||| |||||||    
T  11043134 gaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatc-ttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccattcat 11043036  T
Q  199 gaacaaa 205  Q
    |||||||    
T  11043035 gaacaaa 11043029  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 12729141 - 12729253
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 191  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| || | ||||||||||||||| ||      
T  12729141 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagacc-ttttagagaaaaggtgtaatgctcgacaattgaagcaatataac 12729239  T
Q  192 cattcatgaacaaa 205  Q
    ||||||||| ||||    
T  12729240 cattcatgagcaaa 12729253  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 28696422 - 28696338
Alignment:
Q  120 aaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 205  Q
    |||||||||||||  |||||||||| | ||||||||||||  |||| || || |||||||||||||||||  ||||||||||||||    
T  28696422 aaaagttgcaatgggtaaatagagatc-ttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa 28696338  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 20251147 - 20251258
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 191  Q
    ||||| ||||||||  |||||||||||| |||||||||||  ||||||||||| | ||||||||||||  |||||||||||| ||||||| |||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatc-ttttagagaaaaagtgtattgtttgataattgaaacaatgtaac 20251245  T
Q  192 cattcatgaacaa 204  Q
     ||||||||||||    
T  20251246 tattcatgaacaa 20251258  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaat 186  Q
    ||||| ||||||||| ||| ||||||||||||||||||||  ||||||||| | ||||||||||||||  ||||||| |||||||||||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaataga-aacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 48780221 - 48780114
Alignment:
Q  98 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 197  Q
    ||||||||  |||||||||||| |||||||||||| ||||| | ||| | ||||||||||||| | || |||||||||||||||||||| ||   |||||    
T  48780221 agaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatc-ttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  198 tgaacaaatt 207  Q
    |||| |||||    
T  48780123 tgaataaatt 48780114  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 24129693 - 24129597
Alignment:
Q  108 aaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 205  Q
    |||||||||||  ||||| |||||| ||||||| || |  |||| ||| |||| ||||||| |||| |||||||||||||||  ||||||||||||||    
T  24129693 aaaatatatttagaaagtcgcaatggttaaatataggct-ttttggaggaaaggtgtattgcttgataattgaagcaatgtaaccattcatgaacaaa 24129597  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 1495110 - 1495028
Alignment:
Q  121 aaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 205  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||  | || ||| |||||||||| ||  ||||||||||||||    
T  1495110 aaagttgcaatggttaaa-agagaccattt-agagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaa 1495028  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 12239982 - 12239877
Alignment:
Q  98 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 197  Q
    ||||||||| ||||||||||||||| ||||||||| ||||| | ||||| |||||| |||||  ||||||| ||||||||||| ||||||||  ||||||    
T  12239982 agaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagacc-ttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  198 tgaacaaa 205  Q
    ||||||||    
T  12239884 tgaacaaa 12239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 24533198 - 24533269
Alignment:
Q  134 ttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 205  Q
    |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||||||  ||||||||||||||    
T  24533198 ttaaatagagatttttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaa 24533269  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 28612504 - 28612400
Alignment:
Q  98 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 197  Q
    ||||||||| ||||||||||| |||  ||| |||| |||||||||| || |||||||| |||| ||||||||||||||||||||||||| ||   |||||    
T  28612504 agaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggcc-ttttagagcaaaggtgtattgtttgacaattgaagcaatataacaattca 28612408  T
Q  198 tgaacaaa 205  Q
    ||||||||    
T  28612407 tgaacaaa 28612400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 34681466 - 34681354
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 191  Q
    ||||| ||||||||  |||||||||||| || ||||||||| ||||| | | ||| ||||||||||||  |||| ||||||||||||||||||||||       
T  34681466 tgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaacc-ttttagagaaaaagtgtaatgtttgacaattgaagcaatgttac 34681368  T
Q  192 cattcatgaacaaa 205  Q
    |||| |||||||||    
T  34681367 cattgatgaacaaa 34681354  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 49053555 - 49053630
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 168  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| |||||| |||||||    
T  49053555 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaaaaggtgtattg 49053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 49061135 - 49061210
Alignment:
Q  92 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 168  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| ||| || |||||||    
T  49061135 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaataggtgtattg 49061210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 42263817 - 42263734
Alignment:
Q  92 tgtgatagaaatttcaaaaatata--tttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgac 174  Q
    ||||| || |||||| ||||||||  ||||||||||||||||| || |||||||| ||||| || |||||||||||||| |||||    
T  42263817 tgtgaaaggaatttccaaaatataaatttgaaaagttgcaatgattgaatagaga-catttaagtgaaaagatgtattgcttgac 42263734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 12634262 - 12634334
Alignment:
Q  115 atttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgta 189  Q
    ||||||||| |||||||| ||||||||||||  |||||  |||| ||| || |||||||| ||||||||||||||    
T  12634262 atttgaaaaattgcaatgattaaatagagac--ttttaatgaaaggatataatgtttgactattgaagcaatgta 12634334  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 215647 - 215730
Alignment:
Q  98 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaag 182  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||||| | ||||  |||||| ||||| |||||||| |||||||    
T  215647 agaaatttccaaaatatatttagaaagttgcaatggttaaatagagatc-ttttgaagaaaatatgtaatgtttgacgattgaag 215730  T

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