View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_83 (Length: 233)
Name: NF17408_low_83
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 2875729 - 2875928
Alignment:
| Q |
19 |
agatcacaattgataagcagcttattgtgctagtttctcagacaaaaaatcttattgcaaatgaatcagtgttgttgtaagagataaaagtcactatact |
118 |
Q |
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| T |
2875729 |
agatcacaattgataagcagcttattgtgctagtttctcagacaaaaaatcttattgcaaatgaatcagtgttgttgtaagagataaaagtcactatact |
2875828 |
T |
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| Q |
119 |
atcttggcattcttttaatcattacaactgtgtttaacaagaaaacattgatcaattattttgatgcatagtttgaagttatttgttggctctgtctctg |
218 |
Q |
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| T |
2875829 |
atcttggcattcttttaatcattacaactgtgtttaacaagaaaacattgatcaattattttgatgcatagtttgaagttatttgttggctctgtctctg |
2875928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 2858325 - 2858393
Alignment:
| Q |
95 |
gtaagagataaaagtcactatactatcttggcattcttttaatcattacaactgtgtttaacaagaaaa |
163 |
Q |
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| T |
2858325 |
gtaagagataaaattcactgttctatcttaccattcttttaattattacaattgtgtttaactagaaaa |
2858393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 2847011 - 2847046
Alignment:
| Q |
175 |
tattttgatgcatagtttgaagttatttgttggctc |
210 |
Q |
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| T |
2847011 |
tattttgatgcatagtttgaagttaattgttggctc |
2847046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 2858848 - 2858883
Alignment:
| Q |
175 |
tattttgatgcatagtttgaagttatttgttggctc |
210 |
Q |
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| T |
2858848 |
tattttgatgcatagtttgaagttaattgttggctc |
2858883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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