View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_88 (Length: 217)
Name: NF17408_low_88
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_88 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 46816315 - 46816521
Alignment:
| Q |
11 |
cacagaatctagtaatatttgagagcaacaaatcccagtgcaatcaatagaacagtaggtgagacattgtaagatgtaatggcagatgatggagtcagag |
110 |
Q |
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| T |
46816315 |
cacagaatctagtaatatttgagagcaacaaatcccagtgcaatcaatagaacagtaggtgagacattgtaagatgtaatggcagatgatggagtcaaag |
46816414 |
T |
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| Q |
111 |
atgagcggccacttcccgttgttgacaccgatggcgatggcggagtcaaaagaggaacatttgtgtcttgttgtggtgccagaggagatgaagttggtga |
210 |
Q |
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| T |
46816415 |
atgagcggccacttcccgttgttgacaccgatggcgatggcggagtcaaaagaggaacatttgtgtcttgttgtggtgccagaggagatgaagttggtga |
46816514 |
T |
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| Q |
211 |
agctggt |
217 |
Q |
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| T |
46816515 |
agctggt |
46816521 |
T |
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