View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_90 (Length: 214)
Name: NF17408_low_90
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_90 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 29710375 - 29710552
Alignment:
| Q |
25 |
cttaatgtatgcttgttttcaacaataatatcttttgaaagaaagctttttactaaccctgataatgtatttactttcattatgcagtttgaatgtgcgt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29710375 |
cttaatgtatgcttgttttcaacaataatatcttttgaaagaaagctttttactaaccctgataatgtatttactttcattatgcagtttgaatgtgcgt |
29710474 |
T |
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| Q |
125 |
acaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
202 |
Q |
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| T |
29710475 |
acaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
29710552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 55805288 - 55805112
Alignment:
| Q |
25 |
cttaatgtatgcttgttttcaacaataatatcttttgaaagaaagctttttactaaccctgataatgtatttactttcattatgcagtttgaatgtgcgt |
124 |
Q |
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| T |
55805288 |
cttaatgtatgcttgttttctacaataatatcctttgaaagaaagctttttactaacc-tgataatgtatttactttcattatgcagtttgaatgtgcgt |
55805190 |
T |
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| Q |
125 |
acaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
202 |
Q |
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| T |
55805189 |
acaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
55805112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 55809001 - 55808930
Alignment:
| Q |
131 |
tggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
202 |
Q |
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| T |
55809001 |
tggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
55808930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 31463483 - 31463590
Alignment:
| Q |
38 |
tgttttcaacaataatatcttttgaaagaaagctttttactaaccctga-taatgtatttactttcattatgcagtttgaatgtgcgtacaagatggtta |
136 |
Q |
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||||||| ||||| ||||||||||| ||||||| || ||||| ||| || ||||||||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
31463483 |
tgttttctacaatgctatcttttgaaggaaagctcttcactaaa--tgaatattgtatttactttcataatgcagtttgaacgtgcatacaagatggtta |
31463580 |
T |
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| Q |
137 |
atgaattgca |
146 |
Q |
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| T |
31463581 |
atgaattgca |
31463590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 31450298 - 31450350
Alignment:
| Q |
99 |
tttcattatgcagtttgaatgtgcgtacaagatggttaatgaattgcagaaaa |
151 |
Q |
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|||||| |||||||||| | |||| |||| ||||||||||||||||||||||| |
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| T |
31450298 |
tttcataatgcagtttgtacgtgcatacatgatggttaatgaattgcagaaaa |
31450350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 15169339 - 15169515
Alignment:
| Q |
25 |
cttaatgtatgcttgttttcaacaataatatcttttgaaagaaagctttttactaaccctgataatgtatttactttcattatgcagtttgaatgtgcgt |
124 |
Q |
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|||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
15169339 |
cttaatgtatgcttgttttctacaatgatattttttgaaagagagctttttactaacc-tgataatgtatttactttaattatgcagtttgaatgtgcgt |
15169437 |
T |
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| Q |
125 |
acaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
202 |
Q |
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| T |
15169438 |
acaagatggttaatgaattgcagaaaaagtattacaaatacaaaacaaccatgtataatgccattatggcaagatatt |
15169515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 15165072 - 15165248
Alignment:
| Q |
25 |
cttaatgtatgcttgttttcaacaataatatcttttgaaagaaagctttttactaaccctgataatgtatttactttcattatgcagtttgaatgtgcgt |
124 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| | |
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| T |
15165072 |
cttaatgtatgcttgttttctacaatgatatcttttgaaagaaagctttttactaacctag-taatgtatttactttcattatgcagtttgaatctgcat |
15165170 |
T |
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| Q |
125 |
acaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatatt |
202 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
15165171 |
acaagatggttaatgaattgcaagaaaagtatttcaaatacaaaacaacaatgtataatgctattatggcaggatatt |
15165248 |
T |
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