View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17409_high_1_N (Length: 621)
Name: NF17409_high_1_N
Description: NF17409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17409_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 28783986 - 28783539
Alignment:
| Q |
1 |
catagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783986 |
catagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactg |
28783887 |
T |
|
| Q |
101 |
ctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783886 |
ctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctga |
28783787 |
T |
|
| Q |
201 |
tttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctccc |
300 |
Q |
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| T |
28783786 |
tttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctcca |
28783687 |
T |
|
| Q |
301 |
tttcctcatattcctatttacaaacctccctttcctcatattcctatctacaaggaaccttgccctccacctgtgcctatctatgaaaaacctatccctc |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28783686 |
ttttctcatattcctatttacaaacctccctttcctcatattcctatctacaagaaaccttgtcctccacctgtgcctatctatgaaaaacctatccctc |
28783587 |
T |
|
| Q |
401 |
ctcctacacctgtttatgagaaacctcttcctccacctacacctgtct |
448 |
Q |
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| T |
28783586 |
ctcctacacctgtttatgagaaacctcttcctccacctacacctgtct |
28783539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 460 - 581
Target Start/End: Complemental strand, 28783315 - 28783194
Alignment:
| Q |
460 |
caaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttcca |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783315 |
caaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttcca |
28783216 |
T |
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| Q |
560 |
gtatacaaacctccacaggttc |
581 |
Q |
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|||||||||||||||| ||||| |
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| T |
28783215 |
gtatacaaacctccaccggttc |
28783194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 497 - 573
Target Start/End: Complemental strand, 28783383 - 28783307
Alignment:
| Q |
497 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcc |
573 |
Q |
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| T |
28783383 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcc |
28783307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 574
Target Start/End: Complemental strand, 28783210 - 28783099
Alignment:
| Q |
460 |
caaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttcca |
559 |
Q |
| |
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||||||||| || ||||||||| ||| |||||||| || ||| |||||||||||||||| ||||||| |||| || |||||| |||||||||||||| |
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| T |
28783210 |
caaacctccaccggttccaaaggcacttccaccaccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttcca |
28783114 |
T |
|
| Q |
560 |
gtatacaaacctcca |
574 |
Q |
| |
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|||| || |||||| |
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| T |
28783113 |
atatataagcctcca |
28783099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 28783500 - 28783450
Alignment:
| Q |
388 |
aaacctatccctcctcctacacctgtttatgagaaacctcttcctccacct |
438 |
Q |
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| T |
28783500 |
aaacctctccctccacctacacctgtgtatgagaaacctcttcctccacct |
28783450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 28783458 - 28783388
Alignment:
| Q |
364 |
cctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
434 |
Q |
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| T |
28783458 |
cctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
28783388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 28783572 - 28783520
Alignment:
| Q |
382 |
tatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
434 |
Q |
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| T |
28783572 |
tatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctcc |
28783520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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