View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17409_high_2 (Length: 428)
Name: NF17409_high_2
Description: NF17409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17409_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 112 - 428
Target Start/End: Complemental strand, 42330732 - 42330416
Alignment:
| Q |
112 |
tttatagttttagtatcttaatttacttcagttattcactatttgtttaaattttttgaatgaaggatggagaaactaactcaactaggaaaagatcaac |
211 |
Q |
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| T |
42330732 |
tttatagttttagtatcttaatttacttcagttattcactatttgtttaaattttttgaatgaaggatggagaaactaactcaactaggaaaagatcaac |
42330633 |
T |
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| Q |
212 |
aacccttgttcgaatgttaagagaaagtatccacactgacgctacaatcaagctcgtatcatcggataaaatcataagagttcatcgagctgttcttgct |
311 |
Q |
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| T |
42330632 |
aacccttgttcgaatgttaagagaaagtatccacactgacgctacaatcaagctcggatcatcggataaaatcataagagttcatcgagctgttcttgct |
42330533 |
T |
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| Q |
312 |
gcccggtcacctatttttgaatacatgtttgcagaagattctaaggagaataacatgcttgttataaatatctcagatatgtctcctgaagtttgtcaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42330532 |
gcccggtcacctatttttgaatacatgtttgcagaagattctaaggagaataacatgcttgttataaatatctcagatatgtctcctgaagtttgtcaag |
42330433 |
T |
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| Q |
412 |
catttatagattatcta |
428 |
Q |
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||||||||||||||||| |
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| T |
42330432 |
catttatagattatcta |
42330416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 42330868 - 42330767
Alignment:
| Q |
1 |
ggaggttgatgttcaactacctgatgttacaacatcctgtgttgaagttgaattcctagatctcaagacttcaaacccaaatgtacgtgcatttaatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42330868 |
ggaggttgatgttcaactacctgatgttacaacatcctgtgttgaagttgaattcctagatctcaagacttcaaacccaaatgtacgtgcatttaatcaa |
42330769 |
T |
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| Q |
101 |
tc |
102 |
Q |
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|| |
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| T |
42330768 |
tc |
42330767 |
T |
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