View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17409_high_4 (Length: 383)
Name: NF17409_high_4
Description: NF17409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17409_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 34899743 - 34899398
Alignment:
| Q |
1 |
tatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgaccc |
100 |
Q |
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| T |
34899743 |
tatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgaccc |
34899645 |
T |
|
| Q |
101 |
actaattgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtctt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899644 |
actagttgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtctt |
34899545 |
T |
|
| Q |
201 |
agcagacacttcttcatagannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatc |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899544 |
agcagacacttcttcatagattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatc |
34899445 |
T |
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| Q |
301 |
caaatagcaccacaagaaacaattagagaagtgtcaaaacaaaaggg |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899444 |
caaatagcaccacaagaaacaattagagaagtgtcaaaacaaaaggg |
34899398 |
T |
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