View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17409_high_5 (Length: 354)
Name: NF17409_high_5
Description: NF17409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17409_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 8196426 - 8196610
Alignment:
| Q |
9 |
gcaatgagatggacat-catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
107 |
Q |
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| T |
8196426 |
gcaatgagatgg-catacatctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
8196524 |
T |
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| Q |
108 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
193 |
Q |
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| T |
8196525 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8196610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 8201186 - 8201370
Alignment:
| Q |
9 |
gcaatgagatggacat-catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
107 |
Q |
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| T |
8201186 |
gcaatgagatgg-catacatctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggat |
8201284 |
T |
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| Q |
108 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
193 |
Q |
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| T |
8201285 |
ggtaattaatatatcagtttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8201370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 194 - 354
Target Start/End: Original strand, 8196682 - 8196842
Alignment:
| Q |
194 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatgtgtttttcatcaatctattaactatttgtttctgt |
293 |
Q |
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| T |
8196682 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8196781 |
T |
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| Q |
294 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctggg |
354 |
Q |
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| T |
8196782 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctggg |
8196842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 194 - 354
Target Start/End: Original strand, 8201442 - 8201602
Alignment:
| Q |
194 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatgtgtttttcatcaatctattaactatttgtttctgt |
293 |
Q |
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| T |
8201442 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8201541 |
T |
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| Q |
294 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctggg |
354 |
Q |
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| T |
8201542 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctggg |
8201602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 4918121 - 4918040
Alignment:
| Q |
198 |
ttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatgtgtttttcatcaatctattaa |
279 |
Q |
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| T |
4918121 |
ttccttaatgcaaagttgcaaactttctaatatcaacttttgctccatgctttaattcatatgtttttcatcgacctattaa |
4918040 |
T |
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