View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17409_high_8 (Length: 330)
Name: NF17409_high_8
Description: NF17409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17409_high_8 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 12933811 - 12933952
Alignment:
| Q |
189 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
287 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| || || ||||| || |||| |||||||||||||||| || || || ||||| | ||| |||| | |
|
|
| T |
12933811 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
12933909 |
T |
|
| Q |
288 |
gcaaattgaataagagtctttatggattgaagcaggcaccaag |
330 |
Q |
| |
|
|||||||||| ||||| | |||||||| || || |||||||| |
|
|
| T |
12933910 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaag |
12933952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
212 |
catggagatttggaagaggagatttatatggagcaacc |
249 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 14177081 - 14177222
Alignment:
| Q |
189 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
287 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| || || ||||| || |||| |||||||||||||||| || || || ||||| | ||| |||| | |
|
|
| T |
14177081 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
14177179 |
T |
|
| Q |
288 |
gcaaattgaataagagtctttatggattgaagcaggcaccaag |
330 |
Q |
| |
|
|||||||||| ||||| | |||||||| || || |||||||| |
|
|
| T |
14177180 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaag |
14177222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 330
Target Start/End: Complemental strand, 28608794 - 28608653
Alignment:
| Q |
189 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
287 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| || || ||||| || |||| ||||||||||||||| ||| || || ||||| | ||| |||| | |
|
|
| T |
28608794 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt |
28608696 |
T |
|
| Q |
288 |
gcaaattgaataagagtctttatggattgaagcaggcaccaag |
330 |
Q |
| |
|
|||||||||| ||||| | |||||||| || || |||||||| |
|
|
| T |
28608695 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaag |
28608653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
| Q |
197 |
aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca |
250 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
20706182 |
aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca |
20706234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
| Q |
182 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
219 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
6692086 |
gagcagttagatgtgaagactgcatttcttcatggaga |
6692123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
| Q |
182 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
219 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
796735 |
gagcagttagatgtgaagactgcatttcttcatggaga |
796698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
| Q |
182 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
219 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
8273092 |
gagcagttagatgtgaagactgcatttcttcatggaga |
8273129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
| Q |
182 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
219 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
19944036 |
gagcagttagatgtgaagactgcatttcttcatggaga |
19944073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University