View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_10 (Length: 679)
Name: NF1740_high_10
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 618; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 7 - 673
Target Start/End: Original strand, 50275148 - 50275818
Alignment:
| Q |
7 |
gtgagatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgc |
106 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50275148 |
gtgaaatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgc |
50275247 |
T |
|
| Q |
107 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275248 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
50275347 |
T |
|
| Q |
207 |
gatgaatgaaagtctccagtctggaaagcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaag |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50275348 |
gatgaatgaaagtctccagtgtggaaagcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaag |
50275447 |
T |
|
| Q |
307 |
tgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgc |
406 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50275448 |
tgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgc |
50275547 |
T |
|
| Q |
407 |
tgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatattt |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50275548 |
tgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatattt |
50275647 |
T |
|
| Q |
507 |
gttagttaattactagtggtagtttgtttttagcctct----ataaagtcttgatgtaaccgcttattcattctaaatatcatttctattttactatcta |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50275648 |
gttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatcta |
50275747 |
T |
|
| Q |
603 |
aacttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagt |
673 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50275748 |
aacttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagt |
50275818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 7 - 673
Target Start/End: Original strand, 50279172 - 50279842
Alignment:
| Q |
7 |
gtgagatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgc |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50279172 |
gtgaaatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgc |
50279271 |
T |
|
| Q |
107 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279272 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
50279371 |
T |
|
| Q |
207 |
gatgaatgaaagtctccagtctggaaagcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaag |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50279372 |
gatgaatgaaagtctccagtgtggaaagcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaag |
50279471 |
T |
|
| Q |
307 |
tgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgc |
406 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279472 |
tgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgc |
50279571 |
T |
|
| Q |
407 |
tgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatattt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279572 |
tgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatattt |
50279671 |
T |
|
| Q |
507 |
gttagttaattactagtggtagtttgtttttagcctct----ataaagtcttgatgtaaccgcttattcattctaaatatcatttctattttactatcta |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279672 |
gttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatcta |
50279771 |
T |
|
| Q |
603 |
aacttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagt |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50279772 |
aacttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagt |
50279842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 22610691 - 22610624
Alignment:
| Q |
299 |
gaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
366 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
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|
| T |
22610691 |
gaggaaagtgtttctaaaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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