View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_100 (Length: 299)
Name: NF1740_high_100
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 52624013 - 52624249
Alignment:
| Q |
1 |
acattttgatacaattggtgtctctccaaattgattctttcacccttgttgttgttgtgtacgttcataggttctccttttggacaaagctcaaaagcta |
100 |
Q |
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| T |
52624013 |
acattttgataatattggtgtctctccaaattgattctttcacccttgttgttgttgtgtacgttcataggttctccttttgaacaaagctcaaaagcta |
52624112 |
T |
|
| Q |
101 |
ggtcaaaacaaggtgcaatcataggtttactcaccaatttctgcttcttcacctttgttgcacccattccaagaccgagacatagacctgtattgcattc |
200 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52624113 |
ggtcaaaacaaggtgcaatcacaggtttattcaccaatttctgcttcttcaccttcgttgcacccattccaagaccgagacatagacctgtattgcattc |
52624212 |
T |
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| Q |
201 |
ttcatcactttccatggctacaatagttagttggttg |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52624213 |
gtcatcactttccatggctacaatagttagttggttg |
52624249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40039541 - 40039309
Alignment:
| Q |
1 |
acattttgatacaattggtgtctctccaaattgattctttcacccttgttgttgttgtgtacgttcataggttctccttttggacaaagctcaaaagcta |
100 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
40039541 |
acattttgataatgttggtgtctctccaaattgaatctttcacccttcttgttgttgtgtacgttcatagcttcttcttttggacaaagctcaaaagcta |
40039442 |
T |
|
| Q |
101 |
ggtcaaaacaaggtgcaatcataggtttactcaccaatttctgcttcttcacctttgttgcacccattccaagaccgagacatagacctgtattgcattc |
200 |
Q |
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|||| |||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40039441 |
ggtctaaacaaggtgcaatcacaggtttattcactaatttctgcttcttctcctttgttgcacccattccaagaccgagacatagacctgtattgcattc |
40039342 |
T |
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| Q |
201 |
ttcatcactttccatggctacaatagttagttg |
233 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
40039341 |
ttcatcactttccatggctacaatagttggttg |
40039309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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