View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_106 (Length: 291)
Name: NF1740_high_106
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_106 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 42234100 - 42233837
Alignment:
| Q |
16 |
caagatcatgtaaccttccaaagaacatatacttcaattcaacagaaaactccttcacgtcgtgggcccgtgtannnnnnnnnnnnnnnnnnngttgcct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42234100 |
caagatcatgtaaccttccaaagaacatatacttcaattcaacagaaaactccttcacgtcgtgggcccgtgtatttgtttttttttt-----gttgcct |
42234006 |
T |
|
| Q |
116 |
tttctagggaataattgtttttctgtttcacctatccagctattgccaacaaaaatttaaatatgatatgagcatattcatgtgtttataaatagatgta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42234005 |
tttctagggaataattgtttttctgtttcacctatccatctattgccaacaaaaatttaaatatgatatgagcatattcatgtgtttataaatagatgta |
42233906 |
T |
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| Q |
216 |
atctttactttgcaagagtgtgtcgtgtgctcaacccaaatttgaagataaatattagagcctatgcta |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42233905 |
gtctttactttgcaagagtgtgtcgtgtgctcaacccaaatttgaagataaatattagagcctatgcta |
42233837 |
T |
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