View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_11 (Length: 673)
Name: NF1740_high_11
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 320 - 568
Target Start/End: Original strand, 27666491 - 27666749
Alignment:
| Q |
320 |
attcgaattcaagctctaaaaatgtaacaaagtcaaaaccctaacaaaaatatgaaaattgctctttagcatctataatagtttgcttccgcatcttaaa |
419 |
Q |
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| T |
27666491 |
attcgaattcaagctctaaaaatgtaacaaagtcaaaaccctaacaaaaatatgaaaattgctctttagcatctataatagtttgcttccgcatcttaaa |
27666590 |
T |
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| Q |
420 |
ctaccaaaaacatcttaacgacaattaaaaaccaccatcaggaacagtagttaactgcagttcaaatttagcaaaatgttaataattt----------cc |
509 |
Q |
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| T |
27666591 |
ctaccaaaaacatcttatcgacaattaaaaaccaccatcaggaacagtagttaactgcagttcaaatttagcaaaatgttaataatttcccttcataacc |
27666690 |
T |
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| Q |
510 |
cttcagaacgacaatgcataaacgaatctataaaactgagaatccacctaagcagtagt |
568 |
Q |
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| T |
27666691 |
cttcagaacgacaatgcaaaaaagaatctataaaactgagaatccacctaagcagtagt |
27666749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 27666299 - 27666491
Alignment:
| Q |
18 |
ataacttggagtgaatagagctgttgtaactcgattctttttaagggtgttctaactagatttgtaggtctacattaagctcttttcatattgtactcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27666299 |
ataacttggagtgaatagagctgttgtaactcgattctttttaagggtgttctaactagatttgtaggtctacattaagctcttttcatattgta----- |
27666393 |
T |
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| Q |
118 |
ctactgtatctgaaatgaaatcattttaatgaattcatgctacgctaggatagaaatgattaaaattcgaattctttagcattgtttcttatatataaga |
217 |
Q |
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| T |
27666394 |
--actgtatctgaaatgaaatcattttaatgaattcatgctacgctaggatagaaatgattaaaattcgaattctttagcattgtttcttatatataaga |
27666491 |
T |
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