View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_110 (Length: 282)
Name: NF1740_high_110
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_110 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 50519377 - 50519103
Alignment:
| Q |
1 |
tgtttcttagtttgttaagatattgttgatcatatgaaaagacttcctcaatatataaaaattcaaaacaacttgcgtatgactttataaaattaatcaa |
100 |
Q |
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| T |
50519377 |
tgtttcttagtttgttaagatattgttgatcatatgaaaagacttcctcaatatataaaaattcaaaacaatttgcgtatgactttataaaattaatcaa |
50519278 |
T |
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| Q |
101 |
ccaaaaataagtcagtgtggagtagagtgggagttgaagttgggttggttgttcatttgtctactcaactttaaaagataaggatgtgattttgattgtg |
200 |
Q |
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| T |
50519277 |
ccaaaaataagtcagtgtggagtagagtgggagttgaagttgggttggttgttcatttgtctactcaactttaaaagataaggatgtgattttgattgtg |
50519178 |
T |
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| Q |
201 |
atatgttcacaacccatatacttcnnnnnnnnnnnnnngtacatttcagattgcaacttttgatcttttcatctc |
275 |
Q |
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| T |
50519177 |
atatgttcacaacccatatacttcttttttgtttttttgtacatttcagattgcaacttttgatcttttcatctc |
50519103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 10781658 - 10781575
Alignment:
| Q |
7 |
ttagtttgttaagatattgttgatcatatgaaaagacttcctcaatatataaaaattcaaaacaacttgcgta-tgactttata |
89 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
10781658 |
ttagtttgttaagatattgttgatcatattaaacgacttcctcaatatatataaattcaaaacaacttgagtattgactttata |
10781575 |
T |
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