View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_118 (Length: 273)
Name: NF1740_high_118
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_118 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 28595608 - 28595856
Alignment:
| Q |
10 |
gcagagaagggtaaagaaaaagctggagatgttcaaattcctagcaagttgcagtccatcaaaaatagtccatcaaaataacacaccacatgagtaatat |
109 |
Q |
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| T |
28595608 |
gcagagaagggtaaagaaaaagcaggagatgttcaaattcctagcaagttgtagtccatcaaaaatagtccatcaaaataacacaccacatgagtaatat |
28595707 |
T |
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| Q |
110 |
tcgagtcggtgagacctccgctaaaacccatgatccaagagccattttgattatataagacaccgttgaatctagctttactagaatataatagaaagct |
209 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28595708 |
tcgagtcggtgagaccgccgctaaaacctatgatccaagagccattttgattatataagacaccgttgaatctagctttactagaatacaatagaaagct |
28595807 |
T |
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| Q |
210 |
cccgtcatcattaagcaaaacacaattcaaggaggacggatgccacatt |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28595808 |
cccgtcatcattaagcaaaacacaattcaaggaggacggataccacatt |
28595856 |
T |
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