View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_high_126 (Length: 258)
Name: NF1740_high_126
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_126 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 38008256 - 38008485
Alignment:
| Q |
19 |
ggcagctgcaaaaacattttctttgtcggagaaaatgttccgaccatgacacgcgggtggcctgcaatctatatcttaagatcatgtgactgtgacagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38008256 |
ggcagctgcaaaaacattttctttgtcggagaaaatgttccgaccatgacacgcgggtggcctgcaatctatatcttaagatcatgtgactgtgacagat |
38008355 |
T |
|
| Q |
119 |
gcactcaactcagacaaactgagactgtttgacaaattcagatttcccgctctaccctctgcttgcataaaatgtctgtacgtgcatgcatgttctctac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38008356 |
gcactcaactcagacaaactgagactgtttgacaaattcagatttcccgctctaccctctgcttgcataaaatgtctgtacgtgcatgcatgttctctac |
38008455 |
T |
|
| Q |
219 |
aatttgctcaggcccaattgcatatctctg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38008456 |
aatttgctcaggcccaattgcatatctctg |
38008485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University