View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_high_128 (Length: 255)
Name: NF1740_high_128
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_128 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36398466 - 36398236
Alignment:
| Q |
1 |
ttcccttggtctgaaatgtctttctagctcactaaaagtgcttgtatggtggggatatccactgaattctctaccagttggggttcaactagatgagctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36398466 |
ttcccttggtctgaaatgtctttctagctcactaaaagtgcctgtatggtggggatatccactgaattctctaccagttggggttcaactagatgagctt |
36398367 |
T |
|
| Q |
101 |
gtacatttacaaatgatcaacagtaaaattaaacagttgtggaatggaaatgaggtgagaattttccgttaagatccttcatataatttatagtattgac |
200 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36398366 |
gtaaatttacaaatgatcaacagtaaagttaaacagttgtggaatggaaataaggtgagaattttccgttaagatccttcatataatttatagtattgac |
36398267 |
T |
|
| Q |
201 |
ccaggattttcaaatgctaatctgtttcttg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36398266 |
acaggattttcaaatgctaatctgtttcttg |
36398236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 36406471 - 36406298
Alignment:
| Q |
1 |
ttcccttggtctgaaatgtctttctagctcactaaaagtgcttgtatggtggggatatccactgaattctctaccagttggggttcaactagatgagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36406471 |
ttcccttggtctgaaatgtctttctagctcactaaaagtgcttgtatggtggggatatccactgaattctctaccagttgggattcaactagatgagctt |
36406372 |
T |
|
| Q |
101 |
gtacatttacaaatgatcaacagtaaaattaaacagttgtggaatggaaatgaggtgagaattttccgttaaga |
174 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
36406371 |
gtacatttacaaatgatcaatagtaaaattaaacagttgtggaatggaaatgaggtaagaattttctgttaaga |
36406298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 36392809 - 36392687
Alignment:
| Q |
5 |
cttggtctgaaatgtctttctagctcactaaaagtgcttgtatggtggggatatccactgaattctctaccagttggggttcaactagatgagcttgtac |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | | |||||||||||| ||||||| ||||| | |||||| || | |||||||| ||| ||||||| | |
|
|
| T |
36392809 |
cttggtctgaaatgtctttccagctcactaagattagttgtatggtgggaatatccaatgaataccctaccacttagagttcaactggataagcttgttc |
36392710 |
T |
|
| Q |
105 |
atttacaaatgatcaacagtaaa |
127 |
Q |
| |
|
| ||||||| | |||| |||||| |
|
|
| T |
36392709 |
acttacaaaaggtcaatagtaaa |
36392687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University