View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_129 (Length: 255)

Name: NF1740_high_129
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_129
NF1740_high_129
[»] chr4 (7 HSPs)
chr4 (56-255)||(2563492-2563690)
chr4 (110-156)||(20078530-20078576)
chr4 (110-156)||(20083008-20083054)
chr4 (110-156)||(32600864-32600910)
chr4 (114-156)||(46381326-46381368)
chr4 (111-156)||(14474349-14474394)
chr4 (122-155)||(51515548-51515581)
[»] chr7 (6 HSPs)
chr7 (80-235)||(37218211-37218370)
chr7 (110-249)||(16983879-16984018)
chr7 (110-155)||(43185770-43185815)
chr7 (114-156)||(37399051-37399093)
chr7 (111-156)||(47239750-47239795)
chr7 (110-154)||(36946430-36946474)
[»] chr1 (4 HSPs)
chr1 (176-233)||(25563607-25563664)
chr1 (75-152)||(890487-890566)
chr1 (111-155)||(11844309-11844353)
chr1 (188-249)||(9446273-9446336)
[»] chr8 (9 HSPs)
chr8 (80-156)||(4259742-4259821)
chr8 (182-237)||(36317705-36317760)
chr8 (79-155)||(36980563-36980641)
chr8 (110-156)||(1076527-1076573)
chr8 (176-233)||(7981466-7981523)
chr8 (110-142)||(40392523-40392555)
chr8 (110-156)||(28219153-28219199)
chr8 (110-156)||(33472042-33472088)
chr8 (119-156)||(36317754-36317791)
[»] chr5 (4 HSPs)
chr5 (111-156)||(27158022-27158067)
chr5 (75-155)||(6801031-6801111)
chr5 (75-156)||(25968242-25968325)
chr5 (80-156)||(13908482-13908562)
[»] chr2 (5 HSPs)
chr2 (75-152)||(33440564-33440644)
chr2 (176-231)||(19110213-19110268)
chr2 (122-155)||(17132707-17132740)
chr2 (120-156)||(17766976-17767012)
chr2 (182-234)||(30763541-30763593)
[»] chr6 (1 HSPs)
chr6 (75-156)||(4893159-4893242)
[»] chr3 (3 HSPs)
chr3 (110-154)||(51492801-51492845)
chr3 (110-156)||(5128044-5128090)
chr3 (176-246)||(11266153-11266223)
[»] scaffold0091 (1 HSPs)
scaffold0091 (122-156)||(2161-2195)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 2563690 - 2563492
Alignment:
Q  56 ggtgttcctttgaaaaactgattctataatccgaaaaaatcaaggaatatgctcttttttgaagtttttggattataaaatccgaattgatgaaaaactc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2563690 ggtgttcctttgaaaaactgattctataatccgaaaaaatcaaggaacatgctcttttttgaagttttttgattataaaatccgaattgatgaaaaactc 2563591  T
Q  156 annnnnnnncactatataacaaggagaaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaaaacatagggcgcgcgaaagtaa 255  Q
    |        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2563590 a-tttttttcaccatataacaaggagaaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaaaacatagggcgcgcgaaagtaa 2563492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 20078576 - 20078530
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||| ||||||| |||||| ||||||||||| |||||||||||    
T  20078576 ttttttgaggtttttgaattatagaatccgaattggtgaaaaactca 20078530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 20083054 - 20083008
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||| ||||||| |||||| ||||||||||| |||||||||||    
T  20083054 ttttttgaggtttttgaattatagaatccgaattggtgaaaaactca 20083008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 32600910 - 32600864
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    ||||||||  |||||||||||||||| |||||||| |||||||||||    
T  32600910 ttttttgagttttttggattataaaacccgaattggtgaaaaactca 32600864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 46381326 - 46381368
Alignment:
Q  114 ttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||| |||||||||||||||||| ||||||| |||||||||||    
T  46381326 ttgaggtttttggattataaaattcgaattggtgaaaaactca 46381368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 14474349 - 14474394
Alignment:
Q  111 tttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    ||||||| ||||| |||||||||||||||||||| |||| ||||||    
T  14474349 tttttgaggttttcggattataaaatccgaattggtgaagaactca 14474394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 51515581 - 51515548
Alignment:
Q  122 tttggattataaaatccgaattgatgaaaaactc 155  Q
    ||||||||||||||| ||||||||||||||||||    
T  51515581 tttggattataaaattcgaattgatgaaaaactc 51515548  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 37218211 - 37218370
Alignment:
Q  80 tataatccgaaaaaatcaaggaatatgctct--tttttgaagtttttggattataaaatccgaattgatgaaaaactca-nnnnnnnncactatataac- 175  Q
    |||||||||||||||||||||||| ||| ||  ||||||||||||| |||||||||||||||||||| |||| ||||||         |||  ||||||     
T  37218211 tataatccgaaaaaatcaaggaatgtgccctattttttgaagttttcggattataaaatccgaattggtgaagaactcattttttctccaccctataaca 37218310  T
Q  176 aaggagaaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaaaa 235  Q
    || || |||||||||||||  | ||||||||||||||||||| | |||||||| ||||||    
T  37218311 aaagaaaaactcagttcgggttttaaaatccgaaaatcacagggccatttttgaaaaaaa 37218370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 249
Target Start/End: Original strand, 16983879 - 16984018
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactcannnnnnnncactatataacaaggagaaactcagttcggaatctaaaatccgaa 209  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||| |          ||||| || ||||| ||||||| |||| | |||||||||||||    
T  16983879 ttttttgaggtttttggattataaaatccgaattgttgaaagactaattttttcatcctataaaa-aaggaaaaactcacttcgaattctaaaatccgaa 16983977  T
Q  210 aatcacagcggcatttttg-gaaaaaacatagggcgcgcga 249  Q
    |||||||  |||||||||| |||||||||||||| ||||||    
T  16983978 aatcacatgggcatttttgtgaaaaaacatagggtgcgcga 16984018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 43185815 - 43185770
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactc 155  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  43185815 ttttttgaagttttcggattataaaattcgaattggtgaaaaactc 43185770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 37399051 - 37399093
Alignment:
Q  114 ttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||||||| ||||||||||| |||||| |||||||||||    
T  37399051 ttgaagtttttgaattataaaatctgaattggtgaaaaactca 37399093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 47239750 - 47239795
Alignment:
Q  111 tttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    ||||||| ||||| ||||||||||||| |||||| |||||||||||    
T  47239750 tttttgatgttttcggattataaaatctgaattggtgaaaaactca 47239795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 36946430 - 36946474
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaact 154  Q
    |||||||| ||||| |||||||||||||| ||||| |||||||||    
T  36946430 ttttttgaggttttcggattataaaatcctaattggtgaaaaact 36946474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 25563607 - 25563664
Alignment:
Q  176 aaggagaaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaa 233  Q
    ||||| |||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  25563607 aaggaaaaactcagttcggattctaaaatccgaaaatcatagaggcatttttggaaaa 25563664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 890566 - 890487
Alignment:
Q  75 gattctataatccgaaaaaatcaaggaatatgctct--tttttgaagtttttggattataaaatccgaattgatgaaaaa 152  Q
    |||||||||||||||||||| || |||| | || ||  ||||||| ||||| |||||||||||||||||||  |||||||    
T  890566 gattctataatccgaaaaaagcagggaacacgccctattttttgaggttttcggattataaaatccgaattcgtgaaaaa 890487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 11844353 - 11844309
Alignment:
Q  111 tttttgaagtttttggattataaaatccgaattgatgaaaaactc 155  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||    
T  11844353 tttttgaggttttcggattataaaatccgaattggtgaaaaactc 11844309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 9446273 - 9446336
Alignment:
Q  188 agttcggaatctaaaatccgaaaatcacagcggcatttttgga--aaaaacatagggcgcgcga 249  Q
    |||||||| | ||||||||||||||| ||  ||||||||||||  ||||| |||||||||||||    
T  9446273 agttcggattttaaaatccgaaaatctcaagggcatttttggaagaaaaaaatagggcgcgcga 9446336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 4259742 - 4259821
Alignment:
Q  80 tataatccgaaaaaatcaaggaatatgctc---ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    ||||||||||||||||||||||| | || |   |||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  4259742 tataatccgaaaaaatcaaggaacacgccctatttttttgaagtttttatattataaaatctgaattgatgaagaactca 4259821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 36317760 - 36317705
Alignment:
Q  182 aaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaaaaca 237  Q
    |||||||||||||| | ||||||||||||||||||| || |||||| |||||||||    
T  36317760 aaactcagttcggattttaaaatccgaaaatcacaggggtatttttagaaaaaaca 36317705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 36980641 - 36980563
Alignment:
Q  79 ctataatccgaaaaaatcaaggaatatg--ctcttttttgaagtttttggattataaaatccgaattgatgaaaaactc 155  Q
    ||||||||||||||||||||| || |||  || |||||||| ||||| || |||||||||| |||||| ||||||||||    
T  36980641 ctataatccgaaaaaatcaagaaacatgccctattttttgaggttttcggtttataaaatctgaattggtgaaaaactc 36980563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 1076573 - 1076527
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||    
T  1076573 ttttttgaagttttcggattataaaatccgaattggtgaagaactca 1076527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 7981523 - 7981466
Alignment:
Q  176 aaggagaaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaa 233  Q
    ||||| |||||||||||  | ||||||||||||||||||||  |||||||||||||||    
T  7981523 aaggaaaaactcagttcaaattctaaaatccgaaaatcacaagggcatttttggaaaa 7981466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 40392555 - 40392523
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaat 142  Q
    |||||||||||||||||||||||||||||||||    
T  40392555 ttttttgaagtttttggattataaaatccgaat 40392523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 28219153 - 28219199
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||| ||||| |||||||||||||| ||||| |||||||||||    
T  28219153 ttttttgaggttttcggattataaaatccaaattgttgaaaaactca 28219199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 33472088 - 33472042
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||| ||||| |||||||| ||||||||||| |||||||||||    
T  33472088 ttttttgaggttttcggattatagaatccgaattggtgaaaaactca 33472042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 36317791 - 36317754
Alignment:
Q  119 gtttttggattataaaatccgaattgatgaaaaactca 156  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  36317791 gttttcggattataaaatccgaattggtgaaaaactca 36317754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 27158067 - 27158022
Alignment:
Q  111 tttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  27158067 tttttgacgtttttggattataaaatccgaatttatgaaaaactca 27158022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 6801031 - 6801111
Alignment:
Q  75 gattctataatccgaaaaaatcaaggaatatgctcttttttgaagtttttggattataaaatccgaattgatgaaaaactc 155  Q
    |||| |||||||||||||||||||  |  | || || |||||| ||||| |||||||||||||||||||| ||||||||||    
T  6801031 gattttataatccgaaaaaatcaaatagcacgccctattttgaggttttcggattataaaatccgaattggtgaaaaactc 6801111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 25968325 - 25968242
Alignment:
Q  75 gattctataatccgaaaaaatcaaggaata--tgctcttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||| ||||||||||||||| ||||||| |  | || |||||||  || || |||||||||||||||||||| |||||||||||    
T  25968325 gattttataatccgaaaaaagcaaggaacacatcctattttttggggtattcggattataaaatccgaattggtgaaaaactca 25968242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 13908562 - 13908482
Alignment:
Q  80 tataatccgaaaaaatcaaggaatatgc----tcttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||||||||||||||| |  ||||    | |||||| | |||||||||||||||||||||||||| |||| ||||||    
T  13908562 tataatccgaaaaaatcaagtagcatgccttatttttttttaggtttttggattataaaatccgaattggtgaagaactca 13908482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 33440564 - 33440644
Alignment:
Q  75 gattctataatccgaaaaaa-tcaaggaatatgctctttttt--gaagtttttggattataaaatccgaattgatgaaaaa 152  Q
    |||||||||||||||||||| |||||||| | || || ||||  || ||||| |||||||||||||||||||| |||||||    
T  33440564 gattctataatccgaaaaaaatcaaggaacacgccctatttttagaggttttcggattataaaatccgaattggtgaaaaa 33440644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 19110213 - 19110268
Alignment:
Q  176 aaggagaaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaa 231  Q
    ||||| |||||||||||||| |||||||||||||||||| || ||  |||||||||    
T  19110213 aaggaaaaactcagttcggattctaaaatccgaaaatcaaagaggagtttttggaa 19110268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 17132740 - 17132707
Alignment:
Q  122 tttggattataaaatccgaattgatgaaaaactc 155  Q
    ||||||||||||||||||||||| ||||||||||    
T  17132740 tttggattataaaatccgaattggtgaaaaactc 17132707  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 17766976 - 17767012
Alignment:
Q  120 tttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||||||||||||  ||||||||||||||||||    
T  17766976 tttttggattataaaatgtgaattgatgaaaaactca 17767012  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 30763593 - 30763541
Alignment:
Q  182 aaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaaa 234  Q
    |||||||||||||| | ||||||| ||||||||||| || ||||||| |||||    
T  30763593 aaactcagttcggattttaaaatctgaaaatcacaggggtatttttgaaaaaa 30763541  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 4893242 - 4893159
Alignment:
Q  75 gattctataatccgaaaaaatcaagga--atatgctcttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||||||||||||||| ||||||  | || || |||||| | ||||| | ||||||||||||||||| | ||||||||||    
T  4893242 gattctataatccgaaaaaaacaaggaacacatcctattttttaaggttttggaattataaaatccgaattaaagaaaaactca 4893159  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 51492845 - 51492801
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaact 154  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||    
T  51492845 ttttttgaagttttcggattataaaatccgaattgaggaagaact 51492801  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 5128044 - 5128090
Alignment:
Q  110 ttttttgaagtttttggattataaaatccgaattgatgaaaaactca 156  Q
    |||||||||||||| | |||||||||||||||||| |||| ||||||    
T  5128044 ttttttgaagttttcgaattataaaatccgaattggtgaagaactca 5128090  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 11266223 - 11266153
Alignment:
Q  176 aaggagaaactcagttcggaatctaaaatccgaaaatcacagcggcatttttggaaaaaacatagggcgcg 246  Q
    ||||| || ||||||||||| |||||| |||||||||||||   ||||||||| |||||||| || |||||    
T  11266223 aaggaaaagctcagttcggattctaaattccgaaaatcacatgagcatttttgtaaaaaacacagcgcgcg 11266153  T

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Target: scaffold0091 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 2161 - 2195
Alignment:
Q  122 tttggattataaaatccgaattgatgaaaaactca 156  Q
    ||||||||||||||||||||||| |||||||||||    
T  2161 tttggattataaaatccgaattgctgaaaaactca 2195  T

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