View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_134 (Length: 252)

Name: NF1740_high_134
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_134
NF1740_high_134
[»] chr4 (3 HSPs)
chr4 (22-252)||(11119156-11119386)
chr4 (17-69)||(11119483-11119535)
chr4 (22-69)||(11119411-11119458)
[»] chr2 (2 HSPs)
chr2 (28-239)||(12249573-12249784)
chr2 (157-236)||(32680976-32681055)
[»] chr5 (7 HSPs)
chr5 (31-252)||(42124586-42124807)
chr5 (25-241)||(34239347-34239563)
chr5 (31-228)||(34231601-34231798)
chr5 (163-250)||(42129963-42130050)
chr5 (25-85)||(42118324-42118384)
chr5 (65-134)||(41712465-41712533)
chr5 (155-251)||(41570930-41571026)
[»] chr6 (1 HSPs)
chr6 (31-252)||(25521818-25522039)
[»] chr3 (1 HSPs)
chr3 (175-250)||(8524118-8524193)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 11119386 - 11119156
Alignment:
Q  22 ataccatcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaa 121  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11119386 ataccattctcactttcaaaccttcaacaacttattcacttggatatttcttccaatgcatttagcggtccaataccagatgtgtttggtgggatgacaa 11119287  T
Q  122 aactgcaagaactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataa 221  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11119286 aactgcaagaactcgacttagattataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattaggttgttctaataa 11119187  T
Q  222 taaattagatggtcccctacccaacaaaatt 252  Q
    |||||||||||||||||| ||||||||||||    
T  11119186 taaattagatggtcccctgcccaacaaaatt 11119156  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 11119535 - 11119483
Alignment:
Q  17 atcagataccatcctcacttgcaaaccttcaacaacttattcacttggatctt 69  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  11119535 atcaaataccatcctcactttcaaatcttcaacaacttattcacttggatctt 11119483  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 11119458 - 11119411
Alignment:
Q  22 ataccatcctcacttgcaaaccttcaacaacttattcacttggatctt 69  Q
    |||| ||||||| || |||||||||||||||| |||||||||||||||    
T  11119458 atactatcctcattttcaaaccttcaacaactcattcacttggatctt 11119411  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 12249784 - 12249573
Alignment:
Q  28 tcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgc 127  Q
    |||||| || ||||||||||||  || |||||| |||||||||| | |||| |||||| ||||| |||||||||||||||| ||| |||||| |||||||    
T  12249784 tcctcattttcaaaccttcaacgtctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgc 12249685  T
Q  128 aagaactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaatt 227  Q
    |||||||| |  ||| |   ||||| ||| ||||||||||||| |  ||||||||||||||||||||||||||| |||||||||||||  |||| |||||    
T  12249684 aagaactcaatctagcttcaaacaaattacaaggacaaattccgttttcattatttaacttgactcaacttgttacattagattgttcgcataacaaatt 12249585  T
Q  228 agatggtcccct 239  Q
    ||| ||||||||    
T  12249584 agaaggtcccct 12249573  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 32680976 - 32681055
Alignment:
Q  157 gaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcc 236  Q
    |||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  32680976 gaaggagaaattccatattcattatttaacttgactcatcttgttgcattagattgttctcataataaattagagggtcc 32681055  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 42124807 - 42124586
Alignment:
Q  31 tcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaag 130  Q
    |||||| ||||||||| |||||| |||||||||||||||   |  ||| ||||||  |||| ||| ||||||||||||||||||||||| ||||||||||    
T  42124807 tcactttcaaaccttcgacaactcattcacttggatcttgggtggaattcatttagtggtcaaatcccagatgtgtttggtgggatgaccaaactgcaag 42124708  T
Q  131 aactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattaga 230  Q
    ||||||| |||  |   ||||| |||||||||||||||||||| ||| |||||||||||||||| ||| |  |||||||||||     ||| ||||||||    
T  42124707 aactcgatttaacttccaacaatttagaaggacaaattccatcttcactatttaacttgactcagcttttcacattagattgtagaggtaacaaattaga 42124608  T
Q  231 tggtcccctacccaacaaaatt 252  Q
     |||||||||||||||||||||    
T  42124607 gggtcccctacccaacaaaatt 42124586  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 34239347 - 34239563
Alignment:
Q  25 ccatcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaac 124  Q
    ||||||||| || ||||||||||| | || || |||||| |||||||   |||| || ||| ||||| ||| |||||||| |||||| ||||||| ||||    
T  34239347 ccatcctcattttcaaaccttcaaaatctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaac 34239446  T
Q  125 tgcaagaactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataa 224  Q
    |||||| | || |  ||| |  |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||| || |||||||    
T  34239447 tgcaagtattctatctagcttctaacaaattagaaggacaaattccatcttcattatttaacttgaatcaacttgttgatttagattgtgcttataataa 34239546  T
Q  225 attagatggtcccctac 241  Q
    |||||| ||||| ||||    
T  34239547 attagagggtccactac 34239563  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 34231601 - 34231798
Alignment:
Q  31 tcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaag 130  Q
    |||||| ||||||||| ||| || ||| ||||||||||||| | |||| |||| | ||||| ||| |||||||| ||||| |||||||| ||||||||||    
T  34231601 tcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcggtcaaattccagatgtatttggcgggatgaccaaactgcaag 34231700  T
Q  131 aactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaatta 228  Q
    |||||    || ||   ||||| |||| |||||||||||||   || |||||||| |||||||||||||||  ||| ||||||||  |||||||||||    
T  34231701 aactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagttgactcaacttgttagattcgattgttcatataataaatta 34231798  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 42130050 - 42129963
Alignment:
Q  163 caaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcccctacccaacaaaa 250  Q
    ||||||||||| |||||||||||||||| |||||||  | |||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  42130050 caaattccatcttcattatttaacttgaatcaactttatacattagattgttctaaaaataaattagagggtcccatacccaacaaaa 42129963  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 42118384 - 42118324
Alignment:
Q  25 ccatcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcattta 85  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  42118384 ccatcctcactttcaaaccttcaacaactcattcacttggatctttcttccaattcattta 42118324  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 41712465 - 41712533
Alignment:
Q  65 atctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaagaact 134  Q
    ||||||| | |||| |||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  41712465 atctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaact 41712533  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 41570930 - 41571026
Alignment:
Q  155 tagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcccctacccaacaaaat 251  Q
    |||| |||||||| ||  ||||||| ||||||||| ||||||||| |   || ||||||||| ||||||||||| | ||||| ||||||||||||||    
T  41570930 tagacggacaaatcccgccatcattgtttaacttgtctcaacttgattactttgattgttcttataataaattaaagggtcctctacccaacaaaat 41571026  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 252
Target Start/End: Original strand, 25521818 - 25522039
Alignment:
Q  31 tcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaag 130  Q
    |||||| ||||||||||||| || |||| |||||||||||| | |||| ||||||  |||| ||| ||||| ||||| ||||||||||| ||| ||||||    
T  25521818 tcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagacgtgttcggtgggatgaccaaattgcaag 25521917  T
Q  131 aactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaactt--gttgcattagattgttctaataataaatta 228  Q
    |||||||  || ||  |||||| ||||||||||| |||||||| || |||||||| ||||||   |||  ||||  ||| ||||||||||||||||||||    
T  25521918 aactcgatctatattttaacaaattagaaggacagattccatcttcgttatttaaattgactggtcttaagttg--ttatattgttctaataataaatta 25522015  T
Q  229 gatggtcccctacccaacaaaatt 252  Q
    || |||||  |||| |||||||||    
T  25522016 gagggtcctttacctaacaaaatt 25522039  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 8524193 - 8524118
Alignment:
Q  175 tcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcccctacccaacaaaa 250  Q
    |||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||| ||||||||||||    
T  8524193 tcattatttaacttgactcatcttgttactttagattgttctcataataaattagatggtcccttacccaacaaaa 8524118  T

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