View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_high_135 (Length: 251)
Name: NF1740_high_135
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_135 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 8155589 - 8155368
Alignment:
| Q |
11 |
aatgagtataacagaatctgatcttaattttaataatatacaaaatgtcacaaagtggttgatgcttatcactaatcatcaatatcatcaacctcaaacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8155589 |
aatgagtataacagaatctgatcttaattttaataatatacaaaatgtcacaaagtggttgatgcttatcactaatcatcaatatcatcaacctcaaacc |
8155490 |
T |
|
| Q |
111 |
tatcattttcattcctaacatcctcacggtgatcaaaatatacaccaacttcgttaaacaaagacaacaaatgcatcaactcttcaatcgaaagttttga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8155489 |
tatcattttcattcctaacatcctcacggtgatcaaaatatacaccaacttcgttaaacaaagacaacaaatgcatcaactcttcaatcgaaagttttga |
8155390 |
T |
|
| Q |
211 |
cggccttttatcatcaaaccct |
232 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8155389 |
cggccttttatcatcaaaccct |
8155368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University