View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_14 (Length: 634)
Name: NF1740_high_14
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_14 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 92 - 634
Target Start/End: Original strand, 18684878 - 18685399
Alignment:
| Q |
92 |
ggtccaaacctatgcgatatattcctaaggtaattaatcgtcatcttgttgcttgttgaaactgccaactttgtagcactaacacctctgatcaaatgtg |
191 |
Q |
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| T |
18684878 |
ggtccaaacctatgcgatatattcctaaggtaattaatcgtcatcttgttgcttgttgaaactgccaactttgtagcactaacacctctgatcaaatgtg |
18684977 |
T |
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| Q |
192 |
tgtccggtgtcagacacatgtgatgcctttctaaatattattctttcagttgtttgtaggtagttatatgccattttttattctaattttatggttgttt |
291 |
Q |
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| T |
18684978 |
tgttcggtgtcagacacatgtgatgcctttctaaatattattctttcaattgtttgtagttagttatatgccatttttttt------------------- |
18685058 |
T |
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| Q |
292 |
atgtgtttgtgacaaaatattgattttgcagacttgtgagggtactttcgatcttcctgatctctcggacgatttctccttgaatttgttagattggggc |
391 |
Q |
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| T |
18685059 |
--gtgtttgtgacaaaatattgattttgcagacttgtgagggtactttcgatcttcctgatctctcggacgatttctccttgaatttgttagattggggc |
18685156 |
T |
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| Q |
392 |
tcacgtaatgtccttagcatcgcacttgatcataccatttatttttggaatgcctcggatagttccgggtctgaatttgtcactgtcgatgaagaagagg |
491 |
Q |
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| T |
18685157 |
tcacgtaatgtccttagcatcgcacttgatcataccatttatttttggaatgcctcggatagttccgggtctgaatttgtcactgtcgatgaagaagagg |
18685256 |
T |
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| Q |
492 |
gtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagctctgggataccgctgctaacaaaca |
591 |
Q |
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| T |
18685257 |
gtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagctctgggataccgctgctaacaaaca |
18685356 |
T |
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| Q |
592 |
ggtaaataccgtttgtgttctttgtattcaccatagtgaacat |
634 |
Q |
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| T |
18685357 |
ggtaaataccgtttgtgttctttgtattcaccatagtgaacat |
18685399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 18684816 - 18684865
Alignment:
| Q |
15 |
aattttagctttccgcaataaacctcgagaacgaaatgttatttcccctc |
64 |
Q |
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| T |
18684816 |
aattttagctttccgcaataaacctcgaaaacgcaatgttatttcccctc |
18684865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 13119837 - 13119750
Alignment:
| Q |
512 |
tgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagctctgggataccgctgctaacaaacaggtaaata |
599 |
Q |
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| T |
13119837 |
tgggctcaagatggatgccatttagccgttgggttgaacaattcccttgttcaaatctgggatacaactgctaagaaacaggtaaata |
13119750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 599
Target Start/End: Complemental strand, 43527409 - 43527278
Alignment:
| Q |
468 |
ttgtcactgtcgatgaagaagagggtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagct |
567 |
Q |
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| T |
43527409 |
ttgtcactgtagatgatgatgatggtcctgtcacaagcgttagctgggcccccgatggtcgccatttagccattgggttgaacaactcccatgtccagct |
43527310 |
T |
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| Q |
568 |
ctgggataccgctgctaacaaacaggtaaata |
599 |
Q |
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| T |
43527309 |
ctgggataccactgcttgtaaacaggtaaata |
43527278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 29911343 - 29911376
Alignment:
| Q |
168 |
cactaacacctctgatcaaatgtgtgtccggtgt |
201 |
Q |
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| T |
29911343 |
cactaacacctctgatcaaacgtgtgtccggtgt |
29911376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 15086799 - 15086752
Alignment:
| Q |
160 |
ctttgtagcactaacacctctgatcaaatgtgtgtccggtgtcagacac |
208 |
Q |
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| T |
15086799 |
ctttgtagcac-aacacctttgatcaaatgtgtgtccggtgtccgacac |
15086752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 11602816 - 11602857
Alignment:
| Q |
167 |
gcactaacacctctgatcaaatgtgtgtccggtgtcagacac |
208 |
Q |
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| T |
11602816 |
gcaccaacacctctgatcaaaggtgtgtccggtgtccgacac |
11602857 |
T |
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