View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_144 (Length: 247)
Name: NF1740_high_144
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_144 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 7338084 - 7338317
Alignment:
| Q |
14 |
ataaaatctaatggttgtgataaaagttgcggaaaaagcaaatctttaatgaaaacataagcatacacgctcttctttgatacaacatgcactctccttc |
113 |
Q |
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| T |
7338084 |
ataaaatctaatggttgtgataaaagttgcggaaaaagcaaatctttaatgaaaacataagcatgcacgctcttctttgatacaacatgcactctccttc |
7338183 |
T |
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| Q |
114 |
ttccttctctcatagtctcacaggtcacaactactctccctttccctctccctctcatcgacgcctaatcatttttattcctgaacaaataaaggtaaca |
213 |
Q |
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| T |
7338184 |
ttccttctctcatagtctcacaggtcacagctactctccctttccctctccctctcatcgacgcctaatcatttttattcct-aacaaataaaggtaaca |
7338282 |
T |
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| Q |
214 |
tcaactgaac-aaataacaatcttaaaatcattaa |
247 |
Q |
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| T |
7338283 |
tcaactgaacaaaataacaattttaaaatcattaa |
7338317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 7338792 - 7338729
Alignment:
| Q |
14 |
ataaaatctaatggttgtgat-aaaagttgcggaaaaagcaaatctttaatgaaaacataagcat |
77 |
Q |
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| T |
7338792 |
ataaaatc-aatggttgtgattaaaagttgtggaaaaggcaaatctttaatgaaaaaagaagcat |
7338729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 39310961 - 39310913
Alignment:
| Q |
197 |
aacaaataaaggtaacatcaactgaacaaataacaatcttaaaatcatta |
246 |
Q |
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| T |
39310961 |
aacaaataaaggtaacatcaactaaacaaataacaatc-taaaatcatta |
39310913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 24485346 - 24485300
Alignment:
| Q |
199 |
caaataaaggtaacatcaactgaacaaataacaatcttaaaatcatta |
246 |
Q |
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| T |
24485346 |
caaataaaggtaacatcaattaaacaaataacaatc-taaaatcatta |
24485300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 34228659 - 34228613
Alignment:
| Q |
197 |
aacaaataaaggtaacatcaactgaacaaataacaatcttaaaatcat |
244 |
Q |
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| T |
34228659 |
aacaaataaaggtaacatcaactaaacaaataacaatc-taaaatcat |
34228613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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