View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_158 (Length: 234)
Name: NF1740_high_158
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_158 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 24757342 - 24757180
Alignment:
| Q |
72 |
acaaaacttatatttcgtctgcttttgttgttggtaacttagtatatccgatttttgctgattcacattttataattaactatttccacgggcgaataat |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24757342 |
acaaaacttatatttcgtctgcttttgttgttggtaacttagtatatccgatttttgctgattcacattttataattaactattcccacgggcgaataat |
24757243 |
T |
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| Q |
172 |
tctttgtgatgttaacaaattattactctaatcgtaccttcaaattaaaaacatgcttgtttg |
234 |
Q |
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| T |
24757242 |
tctttgtgatgttaacaaattattactctaatcctaccttcaaattaaaaacatgcttgtttg |
24757180 |
T |
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Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 24766339 - 24766177
Alignment:
| Q |
72 |
acaaaacttatatttcgtctgcttttgttgttggtaacttagtatatccgatttttgctgattcacattttataattaactatttccacgggcgaataat |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24766339 |
acaaaacttatatttcgtctgcttttgttgttggtaacttagtatatccgatttttgctgattcacattttataattaactattcccacgggcgaataat |
24766240 |
T |
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| Q |
172 |
tctttgtgatgttaacaaattattactctaatcgtaccttcaaattaaaaacatgcttgtttg |
234 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24766239 |
tctttgtgatgttaacaaattattactctaatcctaccttcaaattaaaaacatgcttgtttg |
24766177 |
T |
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