View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_high_16 (Length: 614)
Name: NF1740_high_16
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 71 - 597
Target Start/End: Original strand, 32769106 - 32769632
Alignment:
| Q |
71 |
gaaaattttgtttgtgattatgtcttttggtttgtatagcaatgatattttccgtaaccaaaggtcaatattataccagcttatatgttacatacgaatt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32769106 |
gaaaattttgtttgtgattatgtcttttggtttgtatagcaatgatattttccgtaaccaaaggtcaatattataccagcttatatgttacatacgaatt |
32769205 |
T |
|
| Q |
171 |
aaaagtttttacaatttgaaccataaactaacttcaagtaaatagtcacatatcatatcatatgagatgtattcacccgttttcacggagaaaaatcttc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32769206 |
aaaagtttttacaatttgaaccataaactaacttcaagtaaatagtcacatatcatatcatatgagatgtattcacccgctttcacggagaaaaatcttc |
32769305 |
T |
|
| Q |
271 |
cgcttcatgcaagcaagcacgccatcattttcccatgattaattttacccactaactaattagaaatctacatatttgagacctttaataaaatactata |
370 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32769306 |
cgcttcatgcaagtaagcacaccatcagtttcccatgattaattttacccactaactaattagaaatctacatatttgagacctttaataaaatactata |
32769405 |
T |
|
| Q |
371 |
taagcaacttcnnnnnnnnagttaaaactatataagcaacttctttaattaaactactagaggtatatatagatttgaaaagtttacatttgattagttt |
470 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32769406 |
taagcaacttcttttttttagttaaaactatataagcaacttctttaattaaattactagaggtatatatagatttgaaaagtttacatttgattagttt |
32769505 |
T |
|
| Q |
471 |
aacacacaaaaggaataatggaaaagacacaaagagtgcaaaatgtagcttcattatcgaatgaaacaattccagcagagtttgttaggtccgaaaaaga |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32769506 |
aacacacaaaaggaataatggaaaagacacaaagagtgcaaaatgtagcttcattatcgaatgaaacaattccagcagagtttgttaggtccgaaaaaga |
32769605 |
T |
|
| Q |
571 |
acaacctggaaactcaactgtaagagg |
597 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
32769606 |
acaacctggaaactcaactgttagagg |
32769632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 32768823 - 32768864
Alignment:
| Q |
7 |
tcgaagaaaatacaaaaggaatcaactgcgtttatatgataa |
48 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
32768823 |
tcgaataaaataccaaaggaatcaattgcgtttatatgataa |
32768864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University