View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_161 (Length: 233)
Name: NF1740_high_161
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_161 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 47769527 - 47769748
Alignment:
| Q |
8 |
tcgatacaggggaggtcgttagaccagactataagatttcacgatgattaagataaaaccaaactacattccaccattaaaggttatcacagcctagctg |
107 |
Q |
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| T |
47769527 |
tcgatacaggggaggtcgttagaccagactataagattacacgatgattaa-ataaaaccaaactacattccaccattaaaggttaacacagcctagctg |
47769625 |
T |
|
| Q |
108 |
ggatgatctaagaacaaggtacccgtaggtatagaaagggtatagatcgcaagtcactaag--ct----acttgatttgtctgcctataaatatgagtaa |
201 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || || |||||||||| |||||||||||| |||||| |
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| T |
47769626 |
ggatgatctaagaacaaggtactcgtaggtatagaaagggtatagctcgcaagtcactcaggcctcggcccttgatttgtatgcctataaatacgagtaa |
47769725 |
T |
|
| Q |
202 |
tcataacccttcaatccttcatc |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
47769726 |
tcataacccttcaatccttcatc |
47769748 |
T |
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