View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_162 (Length: 231)
Name: NF1740_high_162
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_162 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 757984 - 757781
Alignment:
| Q |
17 |
atatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccagagtttattgttttaggggatcacggtgtaagtatatat |
116 |
Q |
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| T |
757984 |
atatgaaacatttaatcattttgatttatatactatgagtctgttattactatttggtccacagtttattgttttaagggatcacggtgtaagtatatat |
757885 |
T |
|
| Q |
117 |
gtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757884 |
gtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctaca |
757785 |
T |
|
| Q |
217 |
tatt |
220 |
Q |
| |
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|||| |
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|
| T |
757784 |
tatt |
757781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 36989392 - 36989595
Alignment:
| Q |
17 |
atatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccagagtttattgttttaggggatcacggtgtaagtatatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
36989392 |
atatgaaacatttaatcattttgatttatatactatgagtctgttattactatttggtccacagtttattgttttaagggatcacggtgtaagtatatat |
36989491 |
T |
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| Q |
117 |
gtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36989492 |
gtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgatgttttctaca |
36989591 |
T |
|
| Q |
217 |
tatt |
220 |
Q |
| |
|
|||| |
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|
| T |
36989592 |
tatt |
36989595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 37014831 - 37015035
Alignment:
| Q |
17 |
atatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccagagtttattgttttaggggatcacggtgtaagtatatat |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37014831 |
atatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccacagtttattgttttaggggatcacggtgtaagtatatat |
37014930 |
T |
|
| Q |
117 |
gtcacatgaagtcatgtttttgtttgccttcca-tgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgttgttttctac |
215 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
37014931 |
gtcacatgaagtcatgtttttgtttgccttcaattgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgctgttttctac |
37015030 |
T |
|
| Q |
216 |
atatt |
220 |
Q |
| |
|
||||| |
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|
| T |
37015031 |
atatt |
37015035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 32898567 - 32898595
Alignment:
| Q |
104 |
tgtaagtatatatgtcacatgaagtcatg |
132 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
32898567 |
tgtaagtatatatgtcacatgaagtcatg |
32898595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 19180126 - 19179976
Alignment:
| Q |
70 |
ttggtccagagtttattgttttaggggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgt |
169 |
Q |
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|||||||| ||||| | || |||| ||||||| ||||| |||||||||| ||||| ||| ||||||| ||||||||| | |||||||||||||||| | |
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| T |
19180126 |
ttggtccacagtttcattttataggagatcacgatgtaactatatatgtcgcatgaggtcgtgtttttctttgccttcaaactatactgttattatttct |
19180027 |
T |
|
| Q |
170 |
cctataacaacaatggtttttgcttgatttcagtgttgttttctacatatt |
220 |
Q |
| |
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|| |||||||||||||||||||||||||||||| || |||||| ||||||| |
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| T |
19180026 |
ccaataacaacaatggtttttgcttgatttcagcgtcgttttcaacatatt |
19179976 |
T |
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