View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_172 (Length: 211)
Name: NF1740_high_172
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_172 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 47888072 - 47888246
Alignment:
| Q |
16 |
aaaatataaaaaattgatattactcattgtactctcaaaagtgagtagctcactgtagaagagtttgatctggggattaatatattagnnnnnnnncttg |
115 |
Q |
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| T |
47888072 |
aaaatataaaaaattgatattactcattgtactctcaaaagtgagtagctcactttagaagagtttgatctgggcattaatatattagaaaaaaaacttg |
47888171 |
T |
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| Q |
116 |
ccaagattgatatagaacaagcaattaatactttcaaccaaaataaaaacgaatgacactcacggacgataataa |
190 |
Q |
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| T |
47888172 |
ccaagattgatatagcacaagcaattaatactttcaaccaaaataaaaacgaatgacactcacggacgataataa |
47888246 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 27841058 - 27841122
Alignment:
| Q |
112 |
cttgccaagattgatatagaacaagcaattaatactttcaaccaaaataaaaacgaatgacactcac |
178 |
Q |
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| T |
27841058 |
cttgccaagattgata--gcacaagcaattaaaactttagaccaaaataaaaacaaatgacactcac |
27841122 |
T |
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