View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_18 (Length: 609)
Name: NF1740_high_18
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 44342889 - 44342294
Alignment:
| Q |
1 |
ccaagaaagaggagagatttatgccaagagtgcagaagataagcgatctgtgtctctcaacaaaccccaattatcagagaagaagatggattaagattaa |
100 |
Q |
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| T |
44342889 |
ccaagaaagaggagagatttatgccaagagtgcagaagataagcgatctgtgtctctcaacaaaccccaattatcagagaagaagatggattaagattaa |
44342790 |
T |
|
| Q |
101 |
ttaagagatagctttatcatatagcttgtctttcaagtaattttatacagtttagaatttctcttggaaaatggatagttaatcaatgtatatgatatct |
200 |
Q |
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| T |
44342789 |
ttaagagatagctttatcatatagcttgtctttcaagtaattttatacagtttagaatttctcttggaaaatggatagttaatcaatgtatatgatatct |
44342690 |
T |
|
| Q |
201 |
tagccttgactcaatatgctctctccattagataatatatggaaattatatatagcctggtttttggacaaatttgtggtgacaactctatgttgcatag |
300 |
Q |
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| T |
44342689 |
tagccttgacttaatatgctctctccattagataatatatggaaattatatatagcctggtttttggacaaatttgtggtgacaactctatgttgcatag |
44342590 |
T |
|
| Q |
301 |
catataatacccaacaatttgaagccatgccattttttatatttaattattggtttaattgcatctttgttcccctaatttattttgaagtttaaacaaa |
400 |
Q |
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| T |
44342589 |
catataatatccaacaatttgaagccatgccattttttatatttaattattggtttaattgcatctttgttcccctaatttattttgaagtttaaacaaa |
44342490 |
T |
|
| Q |
401 |
catattcattaaggaaaacagatcattatagatagattcaactagtgttgtaatattctccatccacctttttaaaactaacataaataaccaaacaaac |
500 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44342489 |
catattcattaaggagaacagatcattatagatagattcagctagtgttgtaatattctctatccacctttttaaaactaacataaataaccaaacaaac |
44342390 |
T |
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| Q |
501 |
ttcaagtctccaaacaacaagtaagacatttaagaggtcgtaacttaaaaggaggttatcaaattaatatccaaagtctaacacctatactgatatt |
597 |
Q |
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| T |
44342389 |
ttcaagtctcc-aacaacaagtaagacatttaagaggtcgtaacttaaaaggaggttatcaaattaatatccaaagtctaacacctatactgatatt |
44342294 |
T |
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