View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_high_25 (Length: 554)
Name: NF1740_high_25
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 132 - 539
Target Start/End: Original strand, 13870096 - 13870501
Alignment:
| Q |
132 |
cctttgtaggagccaggcttttccaaacggacccaaacaccctttctttggtaccacacaattcctctctcggtatcaacaaattctccaagatcttgta |
231 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13870096 |
cctttgtagaagccaggcttttccacacggacccaaacaccctttctttggtaccacacaattcctctctcggtatcaacaaattctccaagatcttgta |
13870195 |
T |
|
| Q |
232 |
ggttgaactcaccataaaactacctgtctcctccgacttccaccaccacctatcctctcctcccactcttctccaattcctaattacctccaaaagacta |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13870196 |
ggttgaactcaccataaaactacctgtctcctccgacttccaccaccacctatcctctcctcccactcttctccaattcccaattacctccaaaagacta |
13870295 |
T |
|
| Q |
332 |
ttgcacaaaatggtttcccacacaaagagttttcttcgtcaaaccaaagaccaatagcctacttcccagttaagttaattgttgcattgaactgattccg |
431 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
13870296 |
ttgcacaaaatggtttcccacac--agagttttcttcgtcaaaccaaagacaaatagcctacttcccagttaagttgattgttccattgaactgattccg |
13870393 |
T |
|
| Q |
432 |
gccaggaagagcatccttaacggcgagagtgttgtcatccacggtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaac |
531 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13870394 |
gccaggaagagcatccttaacggtgagagtgttgtcatccacagtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaac |
13870493 |
T |
|
| Q |
532 |
agagtcct |
539 |
Q |
| |
|
|||||||| |
|
|
| T |
13870494 |
agagtcct |
13870501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 13869921 - 13870037
Alignment:
| Q |
20 |
ttagaccataccttgaaggcaaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcagaaaacacaattcactgagtcatctaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13869921 |
ttagaccataccttgaaggcaaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcagaaaacacaattcactgagtcatctaaag |
13870020 |
T |
|
| Q |
120 |
gc-aaactctcctcctt |
135 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
13870021 |
gcaaaactctcctcctt |
13870037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University