View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_28 (Length: 543)
Name: NF1740_high_28
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 231 - 525
Target Start/End: Complemental strand, 2351418 - 2351126
Alignment:
| Q |
231 |
ttgtcactacatcgcaatcaattcacacatgcatctaatcaagtattgtctgttatattgttttaggagttaaaaatacatggttgttttttgacaagca |
330 |
Q |
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| T |
2351418 |
ttgtcactacatcacaatcaattcacacatgcatctaatcaagtattgtctactatattgttttaagagttaaaaatacatggttgttttttgacaagca |
2351319 |
T |
|
| Q |
331 |
aaacacatgacgtgttgtgtctttttaattgatacgacaacatatcattaaaaatttatgtaaaatttatttacatcgacgttctatataaattaaactt |
430 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
2351318 |
aaacacatgacgtgttgtgtctttttaattgatgcgacaacatatcattaaaagtttatgtaaaatttatttacatggacggtctatataaattaaactt |
2351219 |
T |
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| Q |
431 |
tgatatacactgctggtaaaaatattcattcatgcataaaaggaataaacccaagcatccatttttaagacaacaaaacctcactcactcacaaa |
525 |
Q |
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| T |
2351218 |
tgatat--actgctggtaaaaatattcattcatgcataaaaggaataaacccaagcatccatttttaagacaacaaaacctcactcactcacaaa |
2351126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 2351628 - 2351443
Alignment:
| Q |
1 |
ttctcttccaaacatatcgatcataagtttaaaaccattaccacatgtgttaagagttaatttcctatcaatcgccccacactatattgtcacttttcat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
2351628 |
ttctcttctaaacatatcgatcataagtttaaaaccattaccacatgtgttaagagttaatttcctatcaatcgctccacactatattgttacttttcat |
2351529 |
T |
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| Q |
101 |
aattaacaactacccaaccatcaacaagaatttaaatattaataagagaaaacacaaagattatagatacaaattaaaatactata |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351528 |
aattaacaactacccaaccatcaacaagaatttaaatattaataagagaaaacacaaagattatagatacaaattaaaatactata |
2351443 |
T |
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