View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_29 (Length: 538)
Name: NF1740_high_29
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 43363780 - 43363399
Alignment:
| Q |
11 |
catcatcattcttgctaatccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctataaatccaacattga |
110 |
Q |
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| T |
43363780 |
catcatcattcttgctaatccaaagtcaccaagcttagcattgaaatttgaatacaacataacattacttgattttatatccctatgaatccaacattga |
43363681 |
T |
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| Q |
111 |
atgattaatatgaatattcgttacaaaaattaaatttaaatatttataaatctattcaaactaaaccgcataaaattgatatgatgatatttattcttag |
210 |
Q |
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| T |
43363680 |
atgattaatatgaatactcgttacaaaaattaaatttaaatatttataaatccattcaaactaaaccgcataaaattgatatgatgatatttattcttag |
43363581 |
T |
|
| Q |
211 |
aaatcatcaaatcaactaaaccgcgaatatttaaaaattttgatcgaatgacnnnnnnncatccaaatataattcagtaatgactggtttattttctatc |
310 |
Q |
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| T |
43363580 |
aagtcatcaaatcaactaaaccgcgaatatttaaaaattttgatcgaatgactttttttcatccaaatataattcagtaatgactggtttattttctatc |
43363481 |
T |
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| Q |
311 |
tgcaacacgattatgatttccacggcatgcttgtgaagccacaaccttctggctccatgaatctttatactcaatcttagat |
392 |
Q |
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| T |
43363480 |
tgcaacatgattatgatttccaccgcatgcttgtgaagccacaaccttctggctccatgaatctttatactcaatcttagat |
43363399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 385 - 514
Target Start/End: Complemental strand, 43362256 - 43362127
Alignment:
| Q |
385 |
tcttagattcagtgaaacaaaccatcaacttcaggggtaaaagtgcaaaaagcgtgggccccacgataattttatctctcgaatctttttctttctcata |
484 |
Q |
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| T |
43362256 |
tcttacattcagtgaaacaaaccatcaacttcagcggtaaaagtgcaaaaagcgtgggcctcacaataattttatctctcgcatctttttctttctcata |
43362157 |
T |
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| Q |
485 |
tgtttccctcgttccaaacgcagcgttaag |
514 |
Q |
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| T |
43362156 |
tgtttccgtcgttccaaacgcagcgttaag |
43362127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 28264554 - 28264620
Alignment:
| Q |
30 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
96 |
Q |
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| T |
28264554 |
ccaaagtcaccaagcttaacattgaaactagaatctagcataacattacttgatttaatatccctat |
28264620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 28279317 - 28279251
Alignment:
| Q |
30 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
96 |
Q |
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| T |
28279317 |
ccaaaatcaccaagcttgacattgaaactagaatctaacataacattacttgatttaatatccctat |
28279251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 28289182 - 28289116
Alignment:
| Q |
30 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
96 |
Q |
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| T |
28289182 |
ccaaagtcaccaagcttaacattgaaactagaatctagcataacattacttgatttgatatctctat |
28289116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 28294369 - 28294435
Alignment:
| Q |
30 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
96 |
Q |
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||||| ||||||||||| |||||||| |||| || ||||||||||||| | |||| |||||||||| |
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| T |
28294369 |
ccaaaatcaccaagcttgacattgaaacttgagtctaacataacattacttgatttaatatccctat |
28294435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 28304571 - 28304637
Alignment:
| Q |
30 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
96 |
Q |
| |
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||||| |||||||||||| |||| ||| ||||||| | ||||||||||| | |||| |||||||||| |
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| T |
28304571 |
ccaaaatcaccaagcttaacattaaaacttgaatctagcataacattacttgatttaatatccctat |
28304637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 28341866 - 28341914
Alignment:
| Q |
30 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattac |
78 |
Q |
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||||| |||||||| |||||||||||||||| ||| ||||| ||||||| |
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| T |
28341866 |
ccaaaatcaccaagtttagcattgaaatttgcatctaacattacattac |
28341914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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