View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_31 (Length: 518)
Name: NF1740_high_31
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 58 - 318
Target Start/End: Original strand, 37544534 - 37544794
Alignment:
| Q |
58 |
ggagaagatattaaattaaataaaacaacggaactctaaaataagtgtgatcaacgcttattaaacaataatttaagcaatcacaaccctctccataatc |
157 |
Q |
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| T |
37544534 |
ggagaagatattaaattaaataaaacaacggaactctaaaataagtgtgatcaacgcttattaaacaataatttaagcaatcacaaccctctccataatc |
37544633 |
T |
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| Q |
158 |
aatcataacctttgaacaatatggtgtttatataacactaatttaagcagtaatttcatggtctagcgataacactatcttatacataatcaatcacaat |
257 |
Q |
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| T |
37544634 |
aatcataacctttgaacaatatggtgtttatataacactaatttaagcagtaatttcatggtctagcgataacactatcttatacataatcaatcacaat |
37544733 |
T |
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| Q |
258 |
atttaaacaatatgatgatgactcatgacatgcatgcaatgtttgtgatgatatatatata |
318 |
Q |
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| T |
37544734 |
atttaaacaatatgatgataactcatgacatgcatgcaatgtttgtgatgatatatatata |
37544794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 37544812 - 37544887
Alignment:
| Q |
308 |
atatatatataagtttgtaataaagagaaaaacaaaattaataatactcttaagatgcaaaaatatacgtgcctaa |
383 |
Q |
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| T |
37544812 |
atatatatgtaagtttgtaataaagagaaaaacaaaattaataatactcttaagatgcaaaaatatacgtgcctaa |
37544887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 243 - 353
Target Start/End: Complemental strand, 16754170 - 16754057
Alignment:
| Q |
243 |
ataatcaatcacaatatttaaacaa-tatgatgatgactcatgacatgcatgcaatgtttgtgatgatatat--atataagtttgtaataaagagaaaaa |
339 |
Q |
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| T |
16754170 |
ataatcaatcatagtatttgaacaaatatagtgatgactcatgacatgcatgcaatgtttatgatgatatatacatgtatgtttgtaataaagacaaaaa |
16754071 |
T |
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| Q |
340 |
caaaattaataata |
353 |
Q |
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| T |
16754070 |
caaaattaataata |
16754057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 16752513 - 16752431
Alignment:
| Q |
246 |
atcaatcacaatatttaaacaatatgatgatgactcatgacatgcatgcaatgtttgtgatgatatatatataagtttgtaat |
328 |
Q |
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| T |
16752513 |
atcaatcacaacaattgaacaatatggtgataacttatgacatatatgcaatgtttgtgatgatacatacatgagcttgtaat |
16752431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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