View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_high_35 (Length: 474)
Name: NF1740_high_35
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_35 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 49350226 - 49349767
Alignment:
| Q |
1 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgannnnnnnggcagagacatctataaatatatatgaagagcttgttaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350226 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgatttttttggcagagacatctataaatatatatgaagagcttgttaagg |
49350127 |
T |
|
| Q |
101 |
aaggtattaat-----taagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagta |
195 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49350126 |
aaggtattaatataattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagt----a |
49350031 |
T |
|
| Q |
196 |
aaagtggaaaatctatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtctttcaagggcttt |
295 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350030 |
aaagtggaaaatttatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtctttcaagggcttt |
49349931 |
T |
|
| Q |
296 |
atgtgctcattgtagactaaaacttctaggcgt-ttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49349930 |
atgtgctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctt |
49349831 |
T |
|
| Q |
395 |
tcagttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttctt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49349830 |
tcagttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttctt |
49349767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 143 - 456
Target Start/End: Complemental strand, 49361998 - 49361691
Alignment:
| Q |
143 |
tactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaagtggaaaatctatgtcccatggcctcagctcaaagtgttgtaat |
242 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
49361998 |
tactaagaatgatcctctactgccattgaagaacttagatcaaggagt----aaaagtggaaaatttacgtcccatggcctcggctcaaagtgttgtaat |
49361903 |
T |
|
| Q |
243 |
tgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgtgctcattgtagactaaaacttctaggcgttttt-cccctcctt |
341 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||| | ||| | |
|
|
| T |
49361902 |
tgagggatatttaaattttgaataattggattcatttgtctttcaagggctttatgtgctca-tgtagactaaaaattaaaggcatttttattcttccat |
49361804 |
T |
|
| Q |
342 |
tttgcctggtggaaac-taaagggtattgttctataaacaattatctttttctttcagttatatgggacaacattatttttctgagttggaagttgttgc |
440 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||||||||||| || |||| ||| || || |||||||||||||||||||||||| |
|
|
| T |
49361803 |
tttgcctggtggaaacttagagggtattattctataaacaattatctttttcttacatttatttggtaccac---atttttctgagttggaagttgttgt |
49361707 |
T |
|
| Q |
441 |
ttgtatgccacgtttc |
456 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
49361706 |
ttgtgtgccacgtttc |
49361691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 419 - 457
Target Start/End: Complemental strand, 19030309 - 19030271
Alignment:
| Q |
419 |
tttctgagttggaagttgttgcttgtatgccacgtttct |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19030309 |
tttctgagttggaagttgttgcttgtatgccacgtttct |
19030271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 250533 - 250085
Alignment:
| Q |
1 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaattt-gagctgannnnnnnggcagagacatctataaatatatatgaagagcttgttaag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250533 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaattttgagctgatttttttggcagagacatctataaatatatatgaagagcttgttaag |
250434 |
T |
|
| Q |
100 |
gaaggtattaattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaag |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
250433 |
gaaggtattaattaagaag---tgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagt----aaaag |
250341 |
T |
|
| Q |
200 |
tggaaaatctatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgt |
299 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250340 |
tggaaaatttatgtcccatggcctcagctcaaagtgttgcaattgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgt |
250241 |
T |
|
| Q |
300 |
gctcattgtagactaaaacttctaggcgt-ttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctttcag |
398 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250240 |
gctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctttcag |
250141 |
T |
|
| Q |
399 |
ttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttct |
457 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
250140 |
ttatatgggaccac---atttttttgagttggaagttgttgcttgtatgccacgtttct |
250085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 42199791 - 42199826
Alignment:
| Q |
416 |
atttttctgagttggaagttgttgcttgtatgccac |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42199791 |
atttttctgagttggaagttgttgcttgtatgccac |
42199826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University