View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_38 (Length: 462)

Name: NF1740_high_38
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_38
NF1740_high_38
[»] chr4 (11 HSPs)
chr4 (107-459)||(34412672-34413021)
chr4 (115-365)||(52457465-52457736)
chr4 (107-346)||(35105968-35106219)
chr4 (107-200)||(40547584-40547677)
chr4 (107-193)||(50135758-50135844)
chr4 (140-200)||(31787237-31787297)
chr4 (107-171)||(56052620-56052684)
chr4 (107-194)||(51075037-51075124)
chr4 (107-158)||(56051249-56051300)
chr4 (111-174)||(53447977-53448042)
chr4 (107-147)||(32208346-32208386)
[»] chr7 (16 HSPs)
chr7 (107-263)||(22643948-22644104)
chr7 (108-266)||(3632808-3632966)
chr7 (107-246)||(33614170-33614309)
chr7 (115-200)||(18534284-18534369)
chr7 (136-238)||(40236629-40236730)
chr7 (296-346)||(3632712-3632762)
chr7 (107-170)||(11749232-11749295)
chr7 (116-182)||(20383810-20383876)
chr7 (304-346)||(33614382-33614424)
chr7 (107-188)||(11202448-11202529)
chr7 (113-173)||(46429654-46429714)
chr7 (116-170)||(44062885-44062939)
chr7 (107-188)||(19933580-19933661)
chr7 (107-188)||(19964719-19964800)
chr7 (107-164)||(34996737-34996794)
chr7 (111-163)||(37031298-37031350)
[»] scaffold0287 (2 HSPs)
scaffold0287 (108-266)||(13119-13277)
scaffold0287 (296-346)||(13323-13373)
[»] chr1 (6 HSPs)
chr1 (116-263)||(38674270-38674418)
chr1 (107-188)||(17683059-17683140)
chr1 (107-158)||(26940334-26940385)
chr1 (107-188)||(51048065-51048146)
chr1 (116-196)||(5510443-5510523)
chr1 (136-188)||(32454520-32454572)
[»] chr8 (16 HSPs)
chr8 (107-200)||(15358610-15358703)
chr8 (107-200)||(19439055-19439148)
chr8 (107-200)||(19575204-19575297)
chr8 (153-224)||(22914393-22914465)
chr8 (107-200)||(3955302-3955395)
chr8 (140-224)||(10405773-10405857)
chr8 (111-188)||(25980721-25980798)
chr8 (107-195)||(9636168-9636256)
chr8 (107-188)||(38783623-38783704)
chr8 (107-188)||(3547327-3547408)
chr8 (119-224)||(19222363-19222468)
chr8 (107-158)||(34649607-34649658)
chr8 (140-194)||(6295420-6295474)
chr8 (107-189)||(37513242-37513324)
chr8 (107-195)||(20812546-20812634)
chr8 (107-175)||(24100704-24100771)
[»] chr3 (15 HSPs)
chr3 (107-224)||(24695808-24695919)
chr3 (107-224)||(45059198-45059316)
chr3 (107-195)||(18370958-18371046)
chr3 (114-192)||(37324876-37324954)
chr3 (107-195)||(24346126-24346214)
chr3 (107-195)||(28255132-28255220)
chr3 (107-195)||(43884988-43885076)
chr3 (115-168)||(41044847-41044900)
chr3 (117-188)||(31880773-31880844)
chr3 (107-158)||(50001860-50001911)
chr3 (107-197)||(39128151-39128241)
chr3 (115-168)||(44247617-44247670)
chr3 (107-188)||(45339362-45339443)
chr3 (116-224)||(53815-53923)
chr3 (141-189)||(39692517-39692565)
[»] chr6 (6 HSPs)
chr6 (115-200)||(17772826-17772911)
chr6 (107-170)||(10365030-10365093)
chr6 (116-196)||(7214508-7214588)
chr6 (107-159)||(13887156-13887208)
chr6 (115-195)||(5045511-5045591)
chr6 (115-167)||(32818821-32818873)
[»] chr5 (5 HSPs)
chr5 (107-194)||(1156942-1157029)
chr5 (115-188)||(233516-233589)
chr5 (116-224)||(17888212-17888320)
chr5 (141-188)||(7440957-7441004)
chr5 (107-188)||(6377491-6377572)
[»] chr2 (5 HSPs)
chr2 (115-188)||(42578452-42578525)
chr2 (107-158)||(27337275-27337326)
chr2 (107-194)||(38587157-38587244)
chr2 (112-197)||(28634516-28634601)
chr2 (107-195)||(11738629-11738717)
[»] scaffold0072 (1 HSPs)
scaffold0072 (115-192)||(46611-46688)
[»] scaffold0069 (1 HSPs)
scaffold0069 (107-195)||(36039-36127)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 107 - 459
Target Start/End: Complemental strand, 34413021 - 34412672
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacc 206  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  34413021 tttgatgtattgtttggtagtagagagatataaaagaaatagagatgaaagaattgttgattatttttaaaagtacgaaaataccc-taattaataaacc 34412923  T
Q  207 tccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacgatgatgataaatttttcacaaaagattaagattatttaatt 306  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  34412922 ttcaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacgatgatgatgaattttttacaaaagatgaagattatttaatt 34412823  T
Q  307 aatttgtaatttcatccaaataaattagaactcattttttattcttattgaaactcatcttattaaataagaacaagacgagaaaaaagtgaaggtataa 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34412822 aatttgtaatttcatccaaataaattagaactcattttttattcttattgaaactcatcttatt-aataagaacaagacgagaaaaaagtgaaggtataa 34412724  T
Q  407 gtatgaataaacatttaaaaagaaccttaattatctttcacctatgcttctcc 459  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||| ||||    
T  34412723 gtatgaataaacatttaaaaa-agccttaattatctttcacccatgctcctcc 34412672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 115 - 365
Target Start/End: Original strand, 52457465 - 52457736
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacctccaatca 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  52457465 attgtttggtagaagagaaatataaaagaaatagagaagaaagaagtgttgattattttcagaagtaccaaaatacccctaattaataaaccttcaatca 52457564  T
Q  215 aaattaatttgttaaataacttaatccaatttctattctaaattgt---tgacgatgatgataaatttttcacaaaagattaag---------------- 295  Q
    |||||||||| ||||||||||||||||||||| || || |||||||   |||| ||||||||   ||||| ||||| ||  |||                    
T  52457565 aaattaatttattaaataacttaatccaatttttaatcaaaattgttgatgacaatgatgatgtttttttgacaaacgacgaagattattatcaaaaatt 52457664  T
Q  296 -attatttaattaatttgtaatttcatccaaataaattagaactc-attttttattcttattgaaactcatc 365  Q
     ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  52457665 aattatttcattaatttgtaacttcatccaaataaattagaactcaattttttattcttattgaaaatcatc 52457736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 107 - 346
Target Start/End: Complemental strand, 35106219 - 35105968
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacc 206  Q
    ||||||||| |||||| ||||||||| ||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||| ||| |||| |  |||||    
T  35106219 tttgatgtagtgtttgatagaagagagatatagaagaaatagagaaaaaagaagtgttgattatttttaaaagtaccaaaatacccttaataataaaacc 35106120  T
Q  207 tccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacgatgatgataaattt-ttcacaaaagatta-----------a 294  Q
    | | |||||| ||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||   ||| || |||||| ||||                
T  35106119 ttcgatcaaagttaatttattaaataacttaatccaatttttaatctaaattgttgacaatgatgatggttttgttgacaaaatattattattaaaaatt 35106020  T
Q  295 gattatttaattaatttgtaatttcatccaaataaattagaactcatttttt 346  Q
     ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  35106019 aattatttcattaatttgtaatttcatccaaataaattagaattcatttttt 35105968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 40547677 - 40547584
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    ||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||| ||| ||||||    
T  40547677 tttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgtcccaaattaa 40547584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 50135844 - 50135758
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccc 193  Q
    ||||||| |||||||||||||| ||| | ||| |||||||||||||||||||| |||||||||  |||  |||||| ||||||||||    
T  50135844 tttgatggattgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgattacctttgaaagtactaaaatgcccc 50135758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 31787237 - 31787297
Alignment:
Q  140 aagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| |||||| ||| ||||||    
T  31787237 aagaaatagagaagaaagaaatgttgattacttttaaaagtactaaaatgtcccaaattaa 31787297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 56052684 - 56052620
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatt 171  Q
    ||||||| || |||||| | |||||| | |||||| ||||||||||||||||| |||||||||||    
T  56052684 tttgatggatggtttggaataagagaaagataaaaaaaatagagaagaaagaaatgttgattatt 56052620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 51075124 - 51075037
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccct 194  Q
    ||||||||| |||||||||||| ||| ||  || |||||||||| ||| |||| ||||||||| ||| | |||||| ||||| |||||    
T  51075124 tttgatgtactgtttggtagaaaagagattgaagagaaatagaggagagagaagtgttgattactttcaaaagtacaaaaatacccct 51075037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 56051249 - 56051300
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaaga 158  Q
    |||||||||||||||||||||||||| | |||| |||||||||  |||||||    
T  56051249 tttgatgtattgtttggtagaagagaaagataagagaaatagaagagaaaga 56051300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 53448042 - 53447977
Alignment:
Q  111 atgtattgtttggtagaagagatatataaaagaaata--gagaagaaagaattgttgattattttt 174  Q
    ||||||||||||||| |||||| | || |||||||||  |||||||||||| |||| |||||||||    
T  53448042 atgtattgtttggtataagagaaagatgaaagaaatatagagaagaaagaagtgttaattattttt 53447977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 32208346 - 32208386
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaata 147  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  32208346 tttgatgtatggtttggtagaagagaaatataagagaaata 32208386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 22643948 - 22644104
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacc 206  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||    
T  22643948 tttgatgtattgtttggtagaagagagatataaaagaaatagagaagaaagaagtgttgattatttttagaagtaccaaaatacccctaactaataaacc 22644047  T
Q  207 tccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttga 263  Q
    | |||| ||||||||||| ||||||||||||||||||||| || | |||||||||||    
T  22644048 ttcaataaaaattaatttattaaataacttaatccaatttttaatttaaattgttga 22644104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 108 - 266
Target Start/End: Complemental strand, 3632966 - 3632808
Alignment:
Q  108 ttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacct 207  Q
    ||||| |||| |||||||||||||| ||||| |||||||| |||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||    
T  3632966 ttgatatattatttggtagaagagagatatagaagaaataaagaagaaaaaagtattgattctttttagaagtaccaaaatgcccctaattaataaacct 3632867  T
Q  208 ccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacga 266  Q
     |||||||||||||||| |||||||||||||| |||||| || ||||||| ||||||||    
T  3632866 tcaatcaaaattaatttattaaataacttaattcaatttttaatctaaatcgttgacga 3632808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 107 - 246
Target Start/End: Original strand, 33614170 - 33614309
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacc 206  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||||||| |||||| ||| |||||||||||||    
T  33614170 tttgaggtattgtttggtagaagagagatataaaagaaatagagaagaaataaatgttgattatctttagaagtagcaaaatacccataattaataaacc 33614269  T
Q  207 tccaatcaaaattaatttgttaaataacttaatccaattt 246  Q
    | |||||||||||||||| |||||||| ||||||||||||    
T  33614270 ttcaatcaaaattaatttattaaataatttaatccaattt 33614309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 18534284 - 18534369
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  18534284 attgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 18534369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 40236629 - 40236730
Alignment:
Q  136 ataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacctccaatcaaaattaatttgttaaataact 235  Q
    |||||| ||||||||| ||||||| ||||  ||||  | | ||||||||||||||||| |||||| ||| || |||||||||||||||| ||||||||||    
T  40236629 ataaaataaatagagatgaaagaaatgtttgttatagtgataagtaccaaaatgcccccaattaa-aaatcttcaatcaaaattaattttttaaataact 40236727  T
Q  236 taa 238  Q
    |||    
T  40236728 taa 40236730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 3632762 - 3632712
Alignment:
Q  296 attatttaattaatttgtaatttcatccaaataaattagaactcatttttt 346  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  3632762 attatttcattaatttgtgacttcatccaaataaattagaactcatttttt 3632712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 11749232 - 11749295
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattat 170  Q
    ||||||| |||||||||||||||||| | | | ||||||||||||||| |||| ||||||||||    
T  11749232 tttgatggattgtttggtagaagagaaagagataagaaatagagaagagagaaatgttgattat 11749295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 20383876 - 20383810
Alignment:
Q  116 ttgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtac 182  Q
    |||||||||| |||||||| | ||||||||| ||||||| |||| ||||||||||| ||| ||||||    
T  20383876 ttgtttggtataagagatagagaaaagaaattgagaagagagaagtgttgattattgttaaaagtac 20383810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 33614382 - 33614424
Alignment:
Q  304 attaatttgtaatttcatccaaataaattagaactcatttttt 346  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  33614382 attaatttgtaaattcatccaaataaattataactcatttttt 33614424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 11202448 - 11202529
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||| |||||||||||||||||| | | | ||||||||||||||| |||| |||| ||||| || | |||||| |||||    
T  11202448 tttgatggattgtttggtagaagagaaagagataagaaatagagaagagagaaatgttaattatattgaaaagtacaaaaat 11202529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 46429654 - 46429714
Alignment:
Q  113 gtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttt 173  Q
    ||||||||||||| |||||| |||| ||||| |||||||| |||||| |||| ||||||||    
T  46429654 gtattgtttggtataagagaaatatgaaagagatagagaaaaaagaagtgttaattatttt 46429714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 44062939 - 44062885
Alignment:
Q  116 ttgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattat 170  Q
    |||||||||| |||||| | ||| |||| ||||||||||||||| ||||||||||    
T  44062939 ttgtttggtataagagaaagatagaagagatagagaagaaagaactgttgattat 44062885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 19933580 - 19933661
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||  ||| ||| |||||| | | | ||||||||||||| | ||||||||| |||||||||| |||||| |||||    
T  19933580 tttgatgtataatttagtataagagaaagagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaat 19933661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 19964719 - 19964800
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||  ||| ||| |||||| | | | ||||||||||||| | ||||||||| |||||||||| |||||| |||||    
T  19964719 tttgatgtataatttagtataagagaaagagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaat 19964800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 34996794 - 34996737
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgtt 164  Q
    ||||||||||||||||||| |||||| | | || |||||||||||||| |||| ||||    
T  34996794 tttgatgtattgtttggtataagagagaaagaagagaaatagagaagagagaagtgtt 34996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 37031298 - 37031350
Alignment:
Q  111 atgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgt 163  Q
    |||||||||||||||||||||| | |||| |||||||||  ||| ||||||||    
T  37031298 atgtattgtttggtagaagagaaagataagagaaatagaagagagagaattgt 37031350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 13119 - 13277
Alignment:
Q  108 ttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacct 207  Q
    ||||| |||| |||||||||||||| ||||| |||||||| |||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||    
T  13119 ttgatatattatttggtagaagagagatatagaagaaataaagaagaaaaaagtattgattctttttagaagtaccaaaatgcccctaattaataaacct 13218  T
Q  208 ccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacga 266  Q
     |||||||||||||||| |||||||||||||| |||||| || ||||||| ||||||||    
T  13219 tcaatcaaaattaatttattaaataacttaattcaatttttaatctaaatcgttgacga 13277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 13323 - 13373
Alignment:
Q  296 attatttaattaatttgtaatttcatccaaataaattagaactcatttttt 346  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  13323 attatttcattaatttgtgacttcatccaaataaattagaactcatttttt 13373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 38674270 - 38674418
Alignment:
Q  116 ttgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacctccaatcaa 215  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| | |||| ||    
T  38674270 ttgtttggtagaagagagatataaaagaaatagagaagaaagaagtgttgattatttttaaaagtaccaaaatacccctaattaataaacattcaatgaa 38674369  T
Q  216 aa-ttaatttgttaaataacttaatccaatttctattctaaattgttga 263  Q
    || ||||||| |||||||||||||| |||||| || | |||||| ||||    
T  38674370 aacttaatttattaaataacttaattcaatttttaatataaattattga 38674418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 17683059 - 17683140
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||| |||||||||||||  ||  || |||| ||||| ||| |||| ||||||||| ||||| ||||||||||||    
T  17683059 tttgatgtattatttggtagaagagggattgaagagaagtagaggagagagaagtgttgattacttttaaaagtaccaaaat 17683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 26940385 - 26940334
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaaga 158  Q
    |||||||||||||||||||||||||| | |||| |||||||||  |||||||    
T  26940385 tttgatgtattgtttggtagaagagaaagataagagaaatagaagagaaaga 26940334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 51048146 - 51048065
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||| ||||||||||| || | | | | ||||||||||||||||| |||| |||||||||| | || |||||| |||||    
T  51048146 tttgatggattgtttggtataaaataaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 51048065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 5510443 - 5510523
Alignment:
Q  116 ttgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaa 196  Q
    |||||||||| |||||| ||||  | || |||| ||||||| || ||||||||||||| | | |||||||||| |||||||    
T  5510443 ttgtttggtataagagaaatattgacgagatagggaagaaataagtgttgattattttgaaatgtaccaaaatacccctaa 5510523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 32454572 - 32454520
Alignment:
Q  136 ataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||||||||||| |||| |||||| |||||| | || |||||||||    
T  32454572 ataaaagaaatagagaagagagaagtgttgactattttaaaaaataccaaaat 32454520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 15358703 - 15358610
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    ||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  15358703 tttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 15358610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 19439055 - 19439148
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    ||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  19439055 tttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 19439148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 19575204 - 19575297
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    ||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  19575204 tttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 19575297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 22914465 - 22914393
Alignment:
Q  153 gaaagaattgttgattatttt-tagaagtaccaaaatgcccctaattaataaacctccaatcaaaattaattt 224  Q
    ||||||| ||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  22914465 gaaagaagtgttgattattttgtaaaagtaccaaaatacccctaattaataaaccttcaatcaaaattaattt 22914393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 3955302 - 3955395
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    ||||||| |||||||| ||||||||| ||||| ||||||||||||||||| || ||||||||| ||||  |||||| |||||| ||| ||||||    
T  3955302 tttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaataagtgttgattacttttgaaagtactaaaatgtcccaaattaa 3955395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 10405773 - 10405857
Alignment:
Q  140 aagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacctccaatcaaaattaattt 224  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| | ||  ||||||   ||||||||||||||    
T  10405773 aagaaatagagaagagagaagtgttgattatttttagaagtaccaaaatgtcccttaatagaaaaccttggatcaaaattaattt 10405857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 25980798 - 25980721
Alignment:
Q  111 atgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||||||| |||||| | || ||||||||||||||||||||| |||| |||||||||   |||||||||||    
T  25980798 atgtattgtttggtataagagaaagatgaaagaaatagagaagaaagaagtgttaattattttttatagtaccaaaat 25980721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 9636256 - 9636168
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    ||||||| | ||||||||| |||||| | ||| ||||||||||||||| |||| ||||| ||||||||| |||||| | ||||||||||    
T  9636256 tttgatggaatgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtactataatgccccta 9636168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 38783704 - 38783623
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||| ||||||||||| |||||| | | ||||||||||||||||| |||| |||||||||| | || |||||| |||||    
T  38783704 tttgatgaattgtttggtataagagaaagacaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 38783623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 3547327 - 3547408
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||||||||||| |||||| | || ||||| | | |||||||| |  ||||||||||||||| |||||| |||||    
T  3547327 tttgatgtattgtttggtataagagaaagatgaaagagacaaagaagaaatatgtgttgattatttttaaaagtactaaaat 3547408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 19222468 - 19222363
Alignment:
Q  119 tttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacctccaatcaaaat 218  Q
    ||||||| |||||| | ||| |||| ||||||||||||||| ||||| ||||||| | | |||||||||| ||| ||||| | ||||||   || |||||    
T  19222468 tttggtataagagacagatagaagagatagagaagaaagaagtgttggttattttgaaatgtaccaaaatacccttaattgaaaaacctaatataaaaat 19222369  T
Q  219 taattt 224  Q
    ||||||    
T  19222368 taattt 19222363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 34649658 - 34649607
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaaga 158  Q
    |||||||||||||||||||||||||| | |||| |||||||||  |||||||    
T  34649658 tttgatgtattgtttggtagaagagaaagataagagaaatagaagagaaaga 34649607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 6295420 - 6295474
Alignment:
Q  140 aagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccct 194  Q
    ||||||| ||||||| |||| ||||||||||||||| |||||| ||||| |||||    
T  6295420 aagaaattgagaagagagaagtgttgattatttttaaaagtacaaaaatacccct 6295474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 37513324 - 37513242
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatg 189  Q
    ||||| ||||||||||||| ||| || |   || |||||||||||||| |||| ||||||||||||||  |||||| ||||||    
T  37513324 tttgaggtattgtttggtataagtgagagggaagagaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatg 37513242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 20812634 - 20812546
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    |||||||| |||||||||  |||||| | || | |||||||||  ||| |||| |||||||||||| || |||||| || |||||||||    
T  20812634 tttgatgtgttgtttggtgtaagagagagatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgccccta 20812546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 24100704 - 24100771
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattattttta 175  Q
    ||||||||||||||||||| |||||| | |  | ||||||||| ||||||||| |||| ||||||||||    
T  24100704 tttgatgtattgtttggtataagagaaagaatagagaaatagaaaagaaagaaatgtt-attattttta 24100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 24695808 - 24695919
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaatt-aataaac 205  Q
    ||||||| |||| |||||| |||||| | ||| ||||||||||||||       |||||||||||||||||||||||||||||||||| ||| || ||||    
T  24695808 tttgatggattgattggtataagagaaagatagaagaaatagagaag-------tgttgattatttttagaagtaccaaaatgccccttattaaaaaaac 24695900  T
Q  206 ctccaatcaaaattaattt 224  Q
    || ||||||||||||||||    
T  24695901 cttcaatcaaaattaattt 24695919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 45059316 - 45059198
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaatt-aataaac 205  Q
    |||||||  ||| |||||| |||||| | ||| ||||||||| ||||| |||| |||||||||||| ||||||||||||||| ||||| ||| || |||     
T  45059316 tttgatgggttgattggtataagagaaagatagaagaaatagggaagagagaagtgttgattatttctagaagtaccaaaataccccttattaaaaaaaa 45059217  T
Q  206 ctccaatcaaaattaattt 224  Q
    || ||||||||||||||||    
T  45059216 cttcaatcaaaattaattt 45059198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 18371046 - 18370958
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    ||||||| ||||||||||| |||||| | ||| ||||||||||||||| |||| ||||| ||||||||| |||||| | ||||||||||    
T  18371046 tttgatggattgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtactataatgccccta 18370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 37324876 - 37324954
Alignment:
Q  114 tattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccc 192  Q
    ||||||||| | ||||||| |||||||| |||||||  ||| |||| ||||||||||||||| |||||| |||||||||    
T  37324876 tattgtttgattgaagagagatataaaataaatagaagagagagaagtgttgattatttttaaaagtacaaaaatgccc 37324954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 24346214 - 24346126
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    |||||||| |||||||||| |||||| |||| | |||||||||  ||| |||| |||||||||||| || |||||| || |||||||||    
T  24346214 tttgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgccccta 24346126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 28255220 - 28255132
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    |||||||| |||||||||| |||||| |||| | |||||||||  ||| |||| |||||||||||| || |||||| || |||||||||    
T  28255220 tttgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgccccta 28255132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 43884988 - 43885076
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    |||||||| |||||||||| |||||| |||| | |||||||||  ||| |||| |||||||||||| || |||||| || |||||||||    
T  43884988 tttgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgccccta 43885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 41044847 - 41044900
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgatt 168  Q
    |||||||||||||| ||| | |||||||||||||||||||||||| | ||||||    
T  41044847 attgtttggtagaatagaaagataaaagaaatagagaagaaagaagtcttgatt 41044900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 31880773 - 31880844
Alignment:
Q  117 tgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||| |||| | ||||||||||||||||||| |||| ||||||| || |  |||||||| |||||    
T  31880773 tgtttggtagaggagaaagataaaagaaatagagaagagagaagtgttgataatatcaagaagtacgaaaat 31880844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 50001911 - 50001860
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaaga 158  Q
    |||||||||||||||||||||||||| | |||| |||||||||  |||||||    
T  50001911 tttgatgtattgtttggtagaagagaaagataagagaaatagaagagaaaga 50001860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 39128151 - 39128241
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaat 197  Q
    ||||||||||||||||||| |||||| | || | |||||||||  ||| |||| |||||||||| | || |||||| | ||| ||||||||    
T  39128151 tttgatgtattgtttggtaaaagagagagatgagagaaatagaagagagagaaatgttgattatatataaaagtactataatacccctaat 39128241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 44247670 - 44247617
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgatt 168  Q
    |||||||| ||||||||| | ||||||||||||||||||| |||| | ||||||    
T  44247670 attgtttgatagaagagaaagataaaagaaatagagaagagagaagttttgatt 44247617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 45339443 - 45339362
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||| ||||||||| |  ||||| | |||| ||||||||| ||||||||| ||||||||||| | | |||||| |||||    
T  45339443 tttgatggattgtttggaatgagagaaagataagagaaatagaaaagaaagaaatgttgattattataaaaagtactaaaat 45339362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 53815 - 53923
Alignment:
Q  116 ttgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacctccaatcaa 215  Q
    |||||||||| |||||| | ||| || | ||||||||||||||| ||||| ||||||| | | |||| ||||| ||| ||||| | ||||||   || ||    
T  53815 ttgtttggtataagagacagatagaaaagatagagaagaaagaagtgttggttattttgaaatgtactaaaatacccttaattgaaaaacctaatataaa 53914  T
Q  216 aattaattt 224  Q
    |||||||||    
T  53915 aattaattt 53923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 39692565 - 39692517
Alignment:
Q  141 agaaatagagaagaaagaattgttgattatttttagaagtaccaaaatg 189  Q
    |||||||||||||| |||| ||||||||||||||  |||||| ||||||    
T  39692565 agaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatg 39692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 17772911 - 17772826
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaa 200  Q
    |||||||||||||| ||| | ||| |||||||||||||||||||| ||||||||| ||||  |||||| ||||| |||| ||||||    
T  17772911 attgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaataccccaaattaa 17772826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 10365030 - 10365093
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattat 170  Q
    ||||||| ||||||||||| |||||| | | ||||||||||||||||| |||| ||||||||||    
T  10365030 tttgatggattgtttggtataagagaaagagaaaagaaatagagaagagagaagtgttgattat 10365093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 7214588 - 7214508
Alignment:
Q  116 ttgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaa 196  Q
    |||||||||| |||||| ||| || ||||||  || |||||||| ||||||||||||||| |||||| || || |||||||    
T  7214588 ttgtttggtataagagagataaaagagaaatgaaggagaaagaaatgttgattatttttaaaagtacaaatatacccctaa 7214508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 13887208 - 13887156
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaa 159  Q
    ||||||| |||||||| ||||||||| | ||| ||||||||||||||||||||    
T  13887208 tttgatggattgtttgttagaagagaaagatagaagaaatagagaagaaagaa 13887156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 5045511 - 5045591
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    |||||||| || |||||| | || | |||||||||  |||||||| |||||||||||| || ||||||||| ||| |||||    
T  5045511 attgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtaccaagatggcccta 5045591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 32818821 - 32818873
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgat 167  Q
    ||||||||||| |||||| ||| ||||||||| ||||||| |||| |||||||    
T  32818821 attgtttggtataagagagatagaaaagaaattgagaagagagaagtgttgat 32818873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 1157029 - 1156942
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccct 194  Q
    |||||||||| |||||||| |||||| | | | ||||||||||||||| |||| ||||| ||||||||| || ||| ||||| |||||    
T  1157029 tttgatgtatagtttggtataagagaaagagagaagaaatagagaagagagaagtgttggttatttttaaaaatactaaaatacccct 1156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 233516 - 233589
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||| |||||| | ||||||||||||||||||| |||| | |||||||| | || |||||| |||||    
T  233516 attgtttggtataagagaaagataaaagaaatagagaagagagaaattttgattatatctaaaagtacaaaaat 233589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 17888320 - 17888212
Alignment:
Q  116 ttgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaattaataaacctccaatcaa 215  Q
    |||||||||| |||||| | | | |||| ||||||||||||||| |||||||||| || | | |||||||||| ||||||| | | ||||||   || ||    
T  17888320 ttgtttggtataagagaaagaaagaagagatagagaagaaagaaatgttgattatattgaaatgtaccaaaatacccctaagtgaaaaaccttatataaa 17888221  T
Q  216 aattaattt 224  Q
    |||||||||    
T  17888220 aattaattt 17888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 7441004 - 7440957
Alignment:
Q  141 agaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    |||||||||||||| ||||||||| |||||||||| |||||| |||||    
T  7441004 agaaatagagaagagagaattgttaattatttttaaaagtacaaaaat 7440957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 6377491 - 6377572
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    |||||||| |||||||||| |||||| | |  | | |||||||  |||||||| |||||||||||||| ||||||| |||||    
T  6377491 tttgatgtgttgtttggtataagagaaaaaagagaaaaatagaagagaaagaagtgttgattatttttggaagtacaaaaat 6377572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 42578525 - 42578452
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaat 188  Q
    ||||||||||| |||||| | ||||||||||||||||||| |||| | |||||||| | || |||||| |||||    
T  42578525 attgtttggtataagagaaagataaaagaaatagagaagagagaagttttgattatatctaaaagtacaaaaat 42578452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 27337275 - 27337326
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaaga 158  Q
    |||||||||||||||||||||||||| | |||| |||||||||  |||||||    
T  27337275 tttgatgtattgtttggtagaagagaaagataagagaaatagaagagaaaga 27337326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 38587157 - 38587244
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccct 194  Q
    ||||||||| ||||||||| || ||| | | |  |||||| ||||||| |||| ||||||||||||||| |||||| ||||| |||||    
T  38587157 tttgatgtagtgtttggtataaaagaaagagatgagaaattgagaagagagaagtgttgattatttttaaaagtacaaaaatacccct 38587244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 28634516 - 28634601
Alignment:
Q  112 tgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgcccctaat 197  Q
    |||||||||||||| |||||| | ||| ||||||||||  ||| |||| |||||||||| | || |||||| | ||| ||||||||    
T  28634516 tgtattgtttggtataagagagagatataagaaatagaagagagagaagtgttgattatatctaaaagtactataatacccctaat 28634601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 11738629 - 11738717
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    ||||||| ||||||||||| || ||| | || | |||||||||||||| |||| ||||| |||| |||| |||||| | |||| |||||    
T  11738629 tttgatggattgtttggtataaaagagaaatgagagaaatagagaagagagaagtgttgtttatatttaaaagtactataatgtcccta 11738717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 46611 - 46688
Alignment:
Q  115 attgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccc 192  Q
    |||||||| || |||||| | || | |||||||||  |||||||| |||||||||||| || ||||||||| ||||||    
T  46611 attgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtaccaagatgccc 46688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 36039 - 36127
Alignment:
Q  107 tttgatgtattgtttggtagaagagatatataaaagaaatagagaagaaagaattgttgattatttttagaagtaccaaaatgccccta 195  Q
    |||||||| |||||||||| |||||| | || | | |||||||  ||| |||| |||||||||||| || |||||| || |||||||||    
T  36039 tttgatgtgttgtttggtataagagagagatgagataaatagaagagagagaagtgttgattatttataaaagtactaagatgccccta 36127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University