View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_39 (Length: 461)
Name: NF1740_high_39
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 51912634 - 51913066
Alignment:
| Q |
19 |
ctacatgaaatttgatgatcgatgaaataatcaaattgggtgcacggcaggaaaataagtgaggggtgtgagtgagtgtgagctgccnnnnnnnnncttt |
118 |
Q |
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| T |
51912634 |
ctacatgaaatttgatgatcgatgaaataatcaaattgggtgcacggcaggaaaataagtgaggggtgtgagtgagtgtgagctgcctttttttt--ttt |
51912731 |
T |
|
| Q |
119 |
ctgcataactgacacacacagagcacagagcacaggcaggacacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912732 |
ctgcataactgacacacacagagcacagagcacaggcaggacacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataac |
51912831 |
T |
|
| Q |
219 |
gtttggaataagacatttggaaataaccggtaattagtaataattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912832 |
gtttggaataagacatttggaaataaccggtaattagtaataattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactata |
51912931 |
T |
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| Q |
319 |
cagtagtttcttcttttgctttttcccc-tggtttactgcacgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatat |
417 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912932 |
cagtagtttcttcttttgctttttccccttggtttactgcacgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatat |
51913031 |
T |
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| Q |
418 |
tggaaaccaaaactgactcaagttacgttcatctc |
452 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
51913032 |
tggaaaccaaaactaactcaagttacgttcatctc |
51913066 |
T |
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