View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_40 (Length: 456)
Name: NF1740_high_40
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 213 - 438
Target Start/End: Original strand, 24266899 - 24267124
Alignment:
| Q |
213 |
agtattaacttccgcagcaagttcggcataaccctgcaccaagtaatttctagcagcagctccatcaacacctttgctaatattgatgacattttttata |
312 |
Q |
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| T |
24266899 |
agtattaacttccgcagcaagttcggcataaccctgcaccaagtaatttctagcagcagctccatcaacacctttgctaatattgatgacattttttata |
24266998 |
T |
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| Q |
313 |
gccaaagcgatgaggcttgagaaaaggaaggagctgaaggagtagacatggtacttcatgaggctttcggcgattgagggtccggctatgcaagcaggat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24266999 |
gccaaagcgatgaggcttgagaaaaggaaggagctgaaggagtagacatggtacttcatgaggctttcggcgattgagggtccggctatgcaagcaggat |
24267098 |
T |
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| Q |
413 |
tgtctccaactaaagcgttgttcgtg |
438 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24267099 |
tgtctccaactaaagcgttgttcgtg |
24267124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 24266695 - 24266811
Alignment:
| Q |
9 |
agcataggggacaagaataacatagataagtaacgcagtaggaacaagaaaaagcaaaggagcaacagcagccaaagtaaaatgactcccacaagccaaa |
108 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24266695 |
agcatagaggacaagaataacatagataagtaacgcagtaggaacaagaaaaagcaaaggagcaacagcagccaaagtataatgactcccacaagccaaa |
24266794 |
T |
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| Q |
109 |
gttcccaacttaatctg |
125 |
Q |
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||||||||||||||||| |
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| T |
24266795 |
gttcccaacttaatctg |
24266811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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