View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_41 (Length: 454)
Name: NF1740_high_41
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 32490094 - 32489656
Alignment:
| Q |
1 |
acctgtcgatcacgcactttggaattcaccctcaaagatagacaaaaacagacacggacactgcctttcctacactctctgagctaaaggtagaaacaaa |
100 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32490094 |
acctgtcgatcacgcactttggattgcaccctcaaagatagacataaacagacacggacactgcctttcctacactctctgagctaaaggtagaaacaaa |
32489995 |
T |
|
| Q |
101 |
ccctatcgatccatgttatcatctccaatcaccacacgctactctaattgagttgggaccacatacaattatgccaacgtacaaataattatggtctatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32489994 |
ccctatcgatccatgttatcatctccaatcaccacacgctactctaattgagttgggaccacatacaattatgccaacgtacaaataattatggtctatg |
32489895 |
T |
|
| Q |
201 |
cttgcttatttatttggacactcaacttcttggtttattagccgactatgaataaaccaccatgcacccttttcaccaacatgccctaataatgttctct |
300 |
Q |
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|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32489894 |
cttacttatttatttgtacactcaacttcttggtttattagccgactatgaataaaccaccatgcatccttttcaccaacatgccctaataatgttctct |
32489795 |
T |
|
| Q |
301 |
acttctacctctacttttgctttacaaacaactcttatcattgtagggtttcatagtcaagacttcaattcaatgtactcataaattttccgcattcact |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32489794 |
acttctacctctacttttgctttacaaacaactcttatcattgtagggtttcatagtcaagacttcaattcaatgtactcataaattttccgcattcact |
32489695 |
T |
|
| Q |
401 |
caatcattatatcaaatagcgtttgtatcaagatcaaac |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32489694 |
caatcattatatcaaatagcgtttgtatcaagatcaaac |
32489656 |
T |
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