View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_42 (Length: 452)
Name: NF1740_high_42
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 30257109 - 30256681
Alignment:
| Q |
9 |
aacaaaggataccctctcacactcctcaaacaactcgagaaacacccatttccctctcggtaaccaattctcagttgattcatcccaatcctgagtgatc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30257109 |
aacataggataccctctcacactcctcaaacaactcgagaaacacccatttccctctcggtaaccaattctcagttgactcatcccaatcctgagtgatc |
30257010 |
T |
|
| Q |
109 |
ctcaattgtttaactccaaccttcatttcatcacctaaatctgggaagaatatgctcctatccttcattccattgcagtgatcgaatatcacaccttccc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30257009 |
ctcaattgtttaactccaaccttcatttcatcacctaaatctgggaagaatatgctcctatccttcattccattgcagcgatcgaatatcacaccttccc |
30256910 |
T |
|
| Q |
209 |
accaagcatcctgatatttcacatcaacacattgtccgaatggaagatcctttatccgtagctcaattggaggcggtaatggtctaatcaggcctcgctg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30256909 |
accaagcatcctgatatttcacatcaacacattgtccgaatggaagatcctttatcagtaactcaattggaggcggtaatggtctaatcaggcctcgctg |
30256810 |
T |
|
| Q |
309 |
atagccacaatctaaagcagatgaagaattaacaccatccaaaacactagaaacatccaccacttcaataagataatctgattcttcatcatcaagaata |
408 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30256809 |
atagctacaatctaaagcagatgaagaattaacaccatccaaaacactagaaacatccaccacttcaataagataatccgattcttcatcatcaagaata |
30256710 |
T |
|
| Q |
409 |
ttttcgtatttgacataacgcatcttcct |
437 |
Q |
| |
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| T |
30256709 |
ttgtcgtatttgacataacgcgtcttcct |
30256681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 25941726 - 25941574
Alignment:
| Q |
87 |
ttcatcccaatcctgagtgatcctcaattgtttaactccaaccttcatttcatcacctaaatctgggaagaatatgctcctatccttcattccattgcag |
186 |
Q |
| |
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|||||||||||||||||| |||| || || | || ||| ||||||||||||||||| ||||| ||||| || | |||| |||| |||||||| || |
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| T |
25941726 |
ttcatcccaatcctgagtaatccgcatttcctgaattccgaccttcatttcatcacccaaatcagggaaaaacacagtcctctcctccattccatcacac |
25941627 |
T |
|
| Q |
187 |
tgatcgaatatcacaccttcccaccaagcatcctgatatttcacatcaacaca |
239 |
Q |
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| ||| || ||||||||||||||||| ||||| || || ||||||||||| |
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| T |
25941626 |
ttatcatttacaacaccttcccaccaagcttcctggtaatttacatcaacaca |
25941574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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